View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10755_high_2 (Length: 298)

Name: NF10755_high_2
Description: NF10755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10755_high_2
NF10755_high_2
[»] chr6 (5 HSPs)
chr6 (1-283)||(1181821-1182103)
chr6 (1-283)||(1192745-1193031)
chr6 (5-259)||(896621-896886)
chr6 (17-237)||(1187059-1187279)
chr6 (123-217)||(1197398-1197492)
[»] chr4 (2 HSPs)
chr4 (1-259)||(10203220-10203481)
chr4 (152-217)||(49611893-49611958)
[»] chr8 (8 HSPs)
chr8 (128-217)||(5171560-5171649)
chr8 (128-214)||(5195094-5195180)
chr8 (151-214)||(1795823-1795886)
chr8 (151-210)||(5185123-5185182)
chr8 (154-217)||(5207118-5207181)
chr8 (128-210)||(5198910-5198992)
chr8 (151-210)||(5177681-5177740)
chr8 (128-195)||(6231610-6231677)
[»] chr7 (2 HSPs)
chr7 (151-210)||(5178815-5178874)
chr7 (152-217)||(8306755-8306820)


Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-144; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 1181821 - 1182103
Alignment:
Q  1 aaaagtgcattttactccaaaatgtttataattaatgttatatgtggcttgtgagttctgactctattttgtttatcatctaaaactgcagattttctat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1181821 aaaagtgcattttactccaaaatgtttataattaatgttatatgtggcttgtgagttctgactctattttgtttatcatctaaaactgcagattttctat 1181920  T
Q  101 gagacgctaatgagnnnnnnngacgattgcttttgcatttctgctgaaattaagtgttggtggcatgacttgaaggatgtgaaagtcataagctctaaga 200  Q
    ||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1181921 gagacgctaatgagaaaaaaagacgattgcttttgcatttctgctgaaattaagtgttggtggcatgacttgaaggatgtgaaagtcataagctctaaga 1182020  T
Q  201 agattgatgagaatgtttgttttaacacaattttagatttatcgccagcttatgcaccaaaatttgcacatcaaacaaatatt 283  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  1182021 agattgatgagaatgtttgttttaacacaattttagattcatcgccagcttatgcaccaaaatttgcacatcaaacaaatatt 1182103  T

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Target: chr6; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 1192745 - 1193031
Alignment:
Q  1 aaaagtgcattttactccaaaatgtttataattaatgttatatgtggcttgtgagttctgactctatttt-gtttatcatctaaaactgcagattttcta 99  Q
    |||||||||||| |||  ||||| ||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||| ||| |||| ||    
T  1192745 aaaagtgcatttaactaaaaaatatttataattaatgttatgtgtggcttgtgagttctaactctatttttgtttatcatctaaaactacagtttttgta 1192844  T
Q  100 tgagacgctaatgagnnnnnnnga---cgattgcttttgcatttctgctgaaattaagtgttggtggcatgacttgaaggatgtgaaagtcataagctct 196  Q
    ||||||||||||| |       ||   | |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  1192845 tgagacgctaatgggaaaaaaagagaacaattgcttttgcatttctgctgaaactaagtgttggtggcatggcttgaaggatgtgaaagtcataagctct 1192944  T
Q  197 aagaagattgatgagaatgtttgttttaacacaattttagatttatcgccagcttatgcaccaaaatttgcacatcaaacaaatatt 283  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||| ||||||||||    
T  1192945 aagaagattgatgagaatgtttgttttaacacaattttagattcatcgccagcttatgcaccagaatttgaacatcgaacaaatatt 1193031  T

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Target: chr6; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 5 - 259
Target Start/End: Original strand, 896621 - 896886
Alignment:
Q  5 gtgcattttactccaaaatgtttataattaatgttat---atgtg--gcttgtgagttctg--actctattttgtttatcatctaaaactgcagattttc 97  Q
    |||||||| |||||||||| |||||||||||||||||   |||||  ||||||||||| |   ||||||||||||||||||||||||||| ||| |||||    
T  896621 gtgcatttaactccaaaatatttataattaatgttatgttatgtgtagcttgtgagttgtataactctattttgtttatcatctaaaactacagtttttc 896720  T
Q  98 tatgagacgctaatgagnnnnnnnga-cgattgcttttgca---tttctgctgaaattaagtgttggtggcatgacttgaaggatgtgaaagtcataagc 193  Q
    ||||||||||||||| |       || ||||||||||||||   |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  896721 tatgagacgctaatgggaaaaaaagaacgattgcttttgcagcatttctgctgaaactaagtgttggtggcatggcttgaaggatgtgaaagtcataagc 896820  T
Q  194 tctaagaagattgatgagaatgtttgttttaacacaattttagatttatcgccagcttatgcacca 259  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  896821 tctaaggagattgatgagaatgtttgttttaacacaattttagattcatcgccagcttatgcacca 896886  T

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Target: chr6; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 1187059 - 1187279
Alignment:
Q  17 ccaaaatgtttataattaatgttatatgtggcttgtgagttctgactctattttgtttatcatctaaaactgcagattttctatgagacgctaatgagnn 116  Q
    ||||| |||| ||| |||||||| | ||| |||| ||| |||| ||||||||||||||||||||||||||| ||  ||||||||||||||||||||||      
T  1187059 ccaaattgttaatacttaatgttttgtgtagcttatgacttctaactctattttgtttatcatctaaaactacaatttttctatgagacgctaatgagaa 1187158  T
Q  117 nnnnngacgattgcttttgcatttctgctgaaattaagtgttggtggcatgacttgaaggatgtgaaagtcataagctctaagaagattgatgagaatgt 216  Q
         | ||||||||||||||||||| || | |  |||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||    
T  1187159 aaaaaggcgattgcttttgcatttcttctaatacgaagtgttggtggcatggcttgaaggatgtgaaagtcacaagctctatgaagattgatgagaatgt 1187258  T
Q  217 ttgttttaacacaattttaga 237  Q
    ||||||||| || ||||||||    
T  1187259 ttgttttaagaccattttaga 1187279  T

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Target: chr6; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 123 - 217
Target Start/End: Original strand, 1197398 - 1197492
Alignment:
Q  123 acgattgcttttgcatttctgctgaaattaagtgttggtggcatgacttgaaggatgtgaaagtcataagctctaagaagattgatgagaatgtt 217  Q
    |||| |||||||||| ||||| ||| |  |||||||||||||||||||||||||||||||||||||  ||| ||| |||||| ||||||||||||    
T  1197398 acgactgcttttgcagttctgatgatacaaagtgttggtggcatgacttgaaggatgtgaaagtcacgagcactatgaagatcgatgagaatgtt 1197492  T

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Target: chr4 (Bit Score: 171; Significance: 7e-92; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 10203220 - 10203481
Alignment:
Q  1 aaaagtgcattttactccaaaatgtttataattaatgttatatgtggcttgtgagttctgactctattttgtttatcatctaaaactgcagattttctat 100  Q
    ||||||||||||  ||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||| ||| |||| |||    
T  10203220 aaaagtgcatttatctccaaaatgtttataattaatgttttctgtggcttgtgagttctaactctattttgtttatcatctaaaactacagtttttttat 10203319  T
Q  101 gagacgctaatgagnnnnnnnga---cgattgcttttgcatttctgctgaaattaagtgttggtggcatgacttgaaggatgtgaaagtcataagctcta 197  Q
    |||||||||||| |       ||   ||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  10203320 gagacgctaatgggaaaaaaagagaacgattgcttttgcatttctactgaaactaagtgttggtggcatggcttgaaggatgtgaaagtcataagctcta 10203419  T
Q  198 agaagattgatgagaatgtttgttttaacacaattttagatttatcgccagcttatgcacca 259  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  10203420 agaagattgatgagaatgtttgttttaacacaattttagattcgtcgccagcttatgcacca 10203481  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 217
Target Start/End: Original strand, 49611893 - 49611958
Alignment:
Q  152 aagtgttggtggcatgacttgaaggatgtgaaagtcataagctctaagaagattgatgagaatgtt 217  Q
    |||||||||||||||| |||||||||| ||||||||  ||  || ||||| |||||||||||||||    
T  49611893 aagtgttggtggcatggcttgaaggatttgaaagtctcaacttcaaagaaaattgatgagaatgtt 49611958  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 128 - 217
Target Start/End: Original strand, 5171560 - 5171649
Alignment:
Q  128 tgcttttgcatttctgctgaaattaagtgttggtggcatgacttgaaggatgtgaaagtcataagctctaagaagattgatgagaatgtt 217  Q
    |||||||||||||||  ||| |  |||||||||||||||| |||||||||||||||||| | |||||||| ||||||||| |||||||||    
T  5171560 tgcttttgcatttcttgtgataccaagtgttggtggcatggcttgaaggatgtgaaagttacaagctctatgaagattgacgagaatgtt 5171649  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 128 - 214
Target Start/End: Original strand, 5195094 - 5195180
Alignment:
Q  128 tgcttttgcatttctgctgaaattaagtgttggtggcatgacttgaaggatgtgaaagtcataagctctaagaagattgatgagaat 214  Q
    |||||||||| ||||  ||| | ||||||||||||||||| ||||||| |||||||||||||||||||   ||||||||||||||||    
T  5195094 tgcttttgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcggtgaagattgatgagaat 5195180  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 151 - 214
Target Start/End: Complemental strand, 1795886 - 1795823
Alignment:
Q  151 taagtgttggtggcatgacttgaaggatgtgaaagtcataagctctaagaagattgatgagaat 214  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||   ||||||||||||||||    
T  1795886 taagtgttggtggcatggcttgaagaatgtgaaagtcataagctcggtgaagattgatgagaat 1795823  T

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Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 151 - 210
Target Start/End: Original strand, 5185123 - 5185182
Alignment:
Q  151 taagtgttggtggcatgacttgaaggatgtgaaagtcataagctctaagaagattgatga 210  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||| | ||||||||||||    
T  5185123 taagtgttggtggcatggcttgaagaatgtgaaagtcataagctcaatgaagattgatga 5185182  T

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Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 5207118 - 5207181
Alignment:
Q  154 gtgttggtggcatgacttgaaggatgtgaaagtcataagctctaagaagattgatgagaatgtt 217  Q
    |||||||||||||| |||||||||||| |||||||  ||||||| |||||||||||||||||||    
T  5207118 gtgttggtggcatggcttgaaggatgtaaaagtcacgagctctatgaagattgatgagaatgtt 5207181  T

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Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 128 - 210
Target Start/End: Complemental strand, 5198992 - 5198910
Alignment:
Q  128 tgcttttgcatttctgctgaaattaagtgttggtggcatgacttgaaggatgtgaaagtcataagctctaagaagattgatga 210  Q
    |||||||||| ||||  ||| | ||||||||||||||||| ||||||| |||||||||||||||||||   ||||||||||||    
T  5198992 tgcttttgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctcggtgaagattgatga 5198910  T

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Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 210
Target Start/End: Original strand, 5177681 - 5177740
Alignment:
Q  151 taagtgttggtggcatgacttgaaggatgtgaaagtcataagctctaagaagattgatga 210  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||   ||||||||||||    
T  5177681 taagtgttggtggcatggcttgaagaatgtgaaagtcataagctcagtgaagattgatga 5177740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 195
Target Start/End: Original strand, 6231610 - 6231677
Alignment:
Q  128 tgcttttgcatttctgctgaaattaagtgttggtggcatgacttgaaggatgtgaaagtcataagctc 195  Q
    |||||||||| ||||  ||| | ||||||||||||||||| ||||||| |||||||||||||||||||    
T  6231610 tgcttttgcagttctagtgatactaagtgttggtggcatggcttgaagaatgtgaaagtcataagctc 6231677  T

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Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 151 - 210
Target Start/End: Original strand, 5178815 - 5178874
Alignment:
Q  151 taagtgttggtggcatgacttgaaggatgtgaaagtcataagctctaagaagattgatga 210  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||| | ||||||||||||    
T  5178815 taagtgttggtggcatggcttgaagaatgtgaaagtcataagctcaatgaagattgatga 5178874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 217
Target Start/End: Original strand, 8306755 - 8306820
Alignment:
Q  152 aagtgttggtggcatgacttgaaggatgtgaaagtcataagctctaagaagattgatgagaatgtt 217  Q
    |||||||||||||||| |||||||||| ||||||||| | |||| | ||| |||||||||||||||    
T  8306755 aagtgttggtggcatggcttgaaggatttgaaagtcacacgctcaatgaaaattgatgagaatgtt 8306820  T

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