View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10755_low_1 (Length: 370)
Name: NF10755_low_1
Description: NF10755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10755_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 10 - 295
Target Start/End: Complemental strand, 32998329 - 32998044
Alignment:
| Q |
10 |
gcagagaaggaaaacggagttacagtagaacaagagagcttcaacaaaaagaagatatacgacgtcgttcagagtttgatattagaaccttgtgatactg |
109 |
Q |
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| T |
32998329 |
gcagagaaggaaaacggagttacagtagaacaagagagcttcaacaaaaagaagatatacgacgtcgttcagagtttgatattagaaccttgtgatactg |
32998230 |
T |
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| Q |
110 |
caaatcgaatcaaaacctcgctctctccttacattcccgaagcttctagaaactacactcgccgtgttcttcgttggtctcgtcaaggctcttcccttcg |
209 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32998229 |
caaatcgaatcaaaacctcactctctccttacattcccgaagcttctagaaactacactcgccgtgttcttcgttggtctcgtcaaggctcttcccttcg |
32998130 |
T |
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| Q |
210 |
acctctccttctcatttcggttcggttactctctcttcatattttctatttcaagtaatgaatttcagtgttaattgttgttgttg |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32998129 |
acctctccttctcatttcggttcggttactctctcttcatattttctatttcaagtaatgaatttcagtgttaattcttgttgttg |
32998044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 318 - 356
Target Start/End: Complemental strand, 32998043 - 32998005
Alignment:
| Q |
318 |
ttgttcgtatattattccaacgctttaaattatgattgc |
356 |
Q |
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| T |
32998043 |
ttgttcgtatattattccaacgctttaaattttgattgc |
32998005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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