View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10755_low_5 (Length: 241)
Name: NF10755_low_5
Description: NF10755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10755_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 34776702 - 34776927
Alignment:
| Q |
1 |
aaataagtaaattaaatgtcaattgtcttttatcacagtgggttctgcatgattggaatgatgaacaatccttaaagatattgaagaacagcaaagaagc |
100 |
Q |
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| T |
34776702 |
aaataactaaattaaatgtcaattgtcttttatcatagtgggttctgcatgattggaatgatgaacaatccttaaagatattgaagaacagcaaagaagc |
34776801 |
T |
|
| Q |
101 |
tatttcacacaaaggaaaggatggaaaagtgattatcattgacatatcaattgatgaaacaagtgatgaccgcggattaactgagttgcaattggactat |
200 |
Q |
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| T |
34776802 |
tatttcacacaaaggaaaggatggaaaagtgattatcattgacatatcaattgatgaaacaagtgatgaccggggattaactgagttgcaattggactat |
34776901 |
T |
|
| Q |
201 |
gatttggtgatgcttacaatgtttct |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
34776902 |
gatttggtgatgcttacaatgtttct |
34776927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 37 - 223
Target Start/End: Original strand, 34784904 - 34785090
Alignment:
| Q |
37 |
agtgggttctgcatgattggaatgatgaacaatccttaaagatattgaagaacagcaaagaagctatttcacacaaaggaaaggatggaaaagtgattat |
136 |
Q |
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|||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| |
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| T |
34784904 |
agtgggttttgcatgactggaatgatgaattatccttaaagatattgaagaacagcaaagaagctatttcacataaagggaaagatggaaaagtgattat |
34785003 |
T |
|
| Q |
137 |
cattgacatatcaattgatgaaacaagtgatgaccgcggattaactgagttgcaattggactatgatttggtgatgcttacaatgtt |
223 |
Q |
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| T |
34785004 |
cattgacatatcaattgatgaaacaagtgatgatcgtagattaactgagttgcaattggaatatgatttggtgatgcttacaatgtt |
34785090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 33 - 166
Target Start/End: Complemental strand, 11467576 - 11467443
Alignment:
| Q |
33 |
tcacagtgggttctgcatgattggaatgatgaacaatccttaaagatattgaagaacagcaaagaagctatttcacacaaaggaaaggatggaaaagtga |
132 |
Q |
| |
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|||||||||||| ||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||| | ||||| | | |
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| T |
11467576 |
tcacagtgggttttgcatgattgggatgatgaactctccttaaagatattgaataacagcaaagaagctatttcaggaaaaggaaaaaaaggaaagataa |
11467477 |
T |
|
| Q |
133 |
ttatcattgacatatcaattgatgaaacaagtga |
166 |
Q |
| |
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| T |
11467476 |
taatcatagacatatcaattgatgaaacaagtga |
11467443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 33 - 194
Target Start/End: Original strand, 11524297 - 11524458
Alignment:
| Q |
33 |
tcacagtgggttctgcatgattggaatgatgaacaatccttaaagatattgaagaacagcaaagaagctatttcacacaaaggaaaggatggaaaagtga |
132 |
Q |
| |
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|||||||||||||||||||||||| ||||||||| ||| ||| ||||||||||||| ||||||||||||||||| ||||| || | ||||| | | |
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| T |
11524297 |
tcacagtgggttctgcatgattgggatgatgaactctccctaaggatattgaagaactgcaaagaagctatttcaggaaaagggaaaaaaggaaagataa |
11524396 |
T |
|
| Q |
133 |
ttatcattgacatatcaattgatgaaacaagtgatgaccgcggattaactgagttgcaattg |
194 |
Q |
| |
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| T |
11524397 |
taatcatagacgtatcaattgatgaaacaagtgatgatcatgaattaaccgagttgcaattg |
11524458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 36 - 166
Target Start/End: Original strand, 11508085 - 11508215
Alignment:
| Q |
36 |
cagtgggttctgcatgattggaatgatgaacaatccttaaagatattgaagaacagcaaagaagctatttcacacaaaggaaaggatggaaaagtgatta |
135 |
Q |
| |
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|||||| |||||||||||||||||||||| | || |||||||||||||||||| ||||| |||||||||| ||||| || ||||| ||||| | |
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| T |
11508085 |
cagtggattctgcatgattggaatgatgatctctctttaaagatattgaagaactgcaaaacagctatttcaggaaaagggaaaacgggaaaggtgataa |
11508184 |
T |
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| Q |
136 |
tcattgacatatcaattgatgaaacaagtga |
166 |
Q |
| |
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| T |
11508185 |
tcattgacatatcaattgatgaaacaagtga |
11508215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 35 - 166
Target Start/End: Original strand, 11548426 - 11548557
Alignment:
| Q |
35 |
acagtgggttctgcatgattggaatgatgaacaatccttaaagatattgaagaacagcaaagaagctatttcacacaaaggaaaggatggaaaagtgatt |
134 |
Q |
| |
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||||||| || |||||||||||||||||||| ||||||||||||||| |||| ||||| ||||||||||| ||||| || | ||||| ||||| |
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| T |
11548426 |
acagtggattttgcatgattggaatgatgaattgtccttaaagatattggagaattgcaaaaaagctatttcaggaaaagggaaaaaaggaaaggtgata |
11548525 |
T |
|
| Q |
135 |
atcattgacatatcaattgatgaaacaagtga |
166 |
Q |
| |
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|||||||||||||||||||| ||||||||||| |
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| T |
11548526 |
atcattgacatatcaattgacgaaacaagtga |
11548557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 35 - 166
Target Start/End: Complemental strand, 11444682 - 11444551
Alignment:
| Q |
35 |
acagtgggttctgcatgattggaatgatgaacaatccttaaagatattgaagaacagcaaagaagctatttcacacaaaggaaaggatggaaaagtgatt |
134 |
Q |
| |
|
||||||| || |||||||||||||||| ||| |||||||||||||| |||| ||||| ||||||||||| ||||| || | ||||| ||||| |
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| T |
11444682 |
acagtggattttgcatgattggaatgacgaattgtccttaaagatattagagaattgcaaaaaagctatttcaggaaaagggaaaaaaggaaaggtgata |
11444583 |
T |
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| Q |
135 |
atcattgacatatcaattgatgaaacaagtga |
166 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
11444582 |
atcattgacatatcaattgatgaaacaagtga |
11444551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 194
Target Start/End: Original strand, 11487725 - 11487784
Alignment:
| Q |
135 |
atcattgacatatcaattgatgaaacaagtgatgaccgcggattaactgagttgcaattg |
194 |
Q |
| |
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||||| ||| ||||||||||||||||||||||||| | | |||||| |||||||||||| |
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| T |
11487725 |
atcatagacgtatcaattgatgaaacaagtgatgatcatgaattaaccgagttgcaattg |
11487784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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