View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10755_low_6 (Length: 239)
Name: NF10755_low_6
Description: NF10755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10755_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 4689882 - 4690091
Alignment:
| Q |
15 |
atgaagacaaatgtgtgagtgttgtattcactgaaaaccaatgaatgaatcatgcaccaaattagaaagaagacaaagatatagtaaaaataaaataaag |
114 |
Q |
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| T |
4689882 |
atgaagacaaatgtgtgagtgttgtattcactgaaaaccaatgaatgaatcatgcaccaaattagaaagaagacaaagatatagtaaaaataaaataaag |
4689981 |
T |
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| Q |
115 |
taaacctggaatgtcactgtagactgtgcttctctccttaaaaagctggtctttacattgggcaccgacgcatgaatcatacacgacagtgattcccaca |
214 |
Q |
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| T |
4689982 |
taaacctggaatgtcactgtagactgtgcttccctccttaaaaagctggtctttacattgggcaccgacgcatgaatcatacacgacagtgattcccaca |
4690081 |
T |
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| Q |
215 |
tgttcagact |
224 |
Q |
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|||||||||| |
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| T |
4690082 |
tgttcagact |
4690091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 34506077 - 34506022
Alignment:
| Q |
169 |
acattgggcaccgacgcatgaatcatacacgacagtgattcccacatgttcagact |
224 |
Q |
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| T |
34506077 |
acattcggaaccgacgcatgaatcatacaagacaatgattcccacatgtttagact |
34506022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 34516198 - 34516152
Alignment:
| Q |
178 |
accgacgcatgaatcatacacgacagtgattcccacatgttcagact |
224 |
Q |
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||||| |||||||||||||| |||| ||||||||||||||| ||||| |
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| T |
34516198 |
accgatgcatgaatcatacaagacaatgattcccacatgtttagact |
34516152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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