View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10755_low_7 (Length: 229)
Name: NF10755_low_7
Description: NF10755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10755_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 4749085 - 4748873
Alignment:
| Q |
1 |
gtgatgacatcaaaagtgaactttttggtctctttgagaaactcaaccggtgtgttcgttttagacgaatcttctaaatttttcactacaatatcttcta |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4749085 |
gtgatgacatcaaaagtgaactttttggcctctttgagaaactcaaccggtgtgttcgttttagacgaatcttctaaatttttcactacaatatcttcta |
4748986 |
T |
|
| Q |
101 |
tgagaccaatataattgtacaattcgtgaccatttattggagacgtggttacctttcgcaaacgtttatgctcggcacttgatattccatggaatgattt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4748985 |
tgagaccaatataattgtacaattcgtgaccatttattggagacgtggttacctttcgcaaacgtttatgctcggcacttgatattccatggaatgattt |
4748886 |
T |
|
| Q |
201 |
tttccctgcaagt |
213 |
Q |
| |
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||||||||||||| |
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| T |
4748885 |
tttccctgcaagt |
4748873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 4756923 - 4756713
Alignment:
| Q |
1 |
gtgatgacatcaaaagtgaactttttggtctctttgagaaactcaaccggtgtgttcgttttagacgaatcttctaaatttttcactacaatatcttcta |
100 |
Q |
| |
|
|||||||| ||||||| |||||| | ||||||| ||||||||| ||||||||| |||||||| | |||||||||| |||||| || |||| || | |
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| T |
4756923 |
gtgatgacttcaaaagcaaactttctcatctctttaagaaactcacatggtgtgttcattttagacaactcttctaaatgtttcacagcactatcctcaa |
4756824 |
T |
|
| Q |
101 |
tgagaccaatataattgtacaat---tcgtgaccatttattggagacgtggttacctttcgcaaacgtttatgctcggcacttgatattccatggaatga |
197 |
Q |
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|||||| ||||||| | ||||| |||| ||||||||| ||||| ||| ||| || ||||||||| || || | | |||| |||||||||||||| |
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| T |
4756823 |
tgagactaatataagttgacaatgcttcgtcaccatttatgggagaagtgattaaacgtctcaaacgtttgtgttcagaatttgagattccatggaatga |
4756724 |
T |
|
| Q |
198 |
ttttttccctg |
208 |
Q |
| |
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| |||| |||| |
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|
| T |
4756723 |
tcttttacctg |
4756713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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