View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10756_high_13 (Length: 250)
Name: NF10756_high_13
Description: NF10756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10756_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 15241713 - 15241941
Alignment:
| Q |
11 |
ttatcccttcttgttgttatatgataatgtgacgttaatgatgttcttttgttgcagtaaatcgtttacaatattgctgtttttcaatactctctattag |
110 |
Q |
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| T |
15241713 |
ttatcccttcttgttgttatatgataatgtgacgttaatgatgttcttttgttgcagtaaatcgtttacaatgttg---ttttgcaatactctctattag |
15241809 |
T |
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| Q |
111 |
cataaaatgttgtcaaataggtctatatatagtggtgtggtgtgtagttaaatttgaacaaactatcattttccgtgatctgcatttgaaaacactgata |
210 |
Q |
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| T |
15241810 |
cacaaaatgttgtcaaataggtctata----gtggtgtggtgtgtagttaaatttgaacaaactatcattttccgtgatctgcatttgaaaacactgata |
15241905 |
T |
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| Q |
211 |
ttttgttctgtgttttggtcgagtcctttgcttctc |
246 |
Q |
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| T |
15241906 |
ttttgttctgtgttttggtcaagtcttttgattctc |
15241941 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 209
Target Start/End: Original strand, 34227386 - 34227444
Alignment:
| Q |
151 |
tgtgtagttaaatttgaacaaactatcattttccgtgatctgcatttgaaaacactgat |
209 |
Q |
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| T |
34227386 |
tgtgtagtgaaatttgaacaaactgttattttccatgatcggcaattgacaacactgat |
34227444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 33651744 - 33651792
Alignment:
| Q |
151 |
tgtgtagttaaatttgaacaaactatcattttccgtgatctgcatttga |
199 |
Q |
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| T |
33651744 |
tgtgtagctaaatttgaacaaactactattttctgtgatctgcaattga |
33651792 |
T |
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