View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10756_high_21 (Length: 223)
Name: NF10756_high_21
Description: NF10756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10756_high_21 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 36 - 210
Target Start/End: Complemental strand, 43083375 - 43083201
Alignment:
| Q |
36 |
gttacacacaagatgagtttttccttctctgaattttctcaattcaaaagagcaagagatcgagctcttaaccatttcctgaagtgacaccttctctgaa |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43083375 |
gttacacacaagatgagtttttccttctctgaattttctcaattcaaaagagcaagagattgagctcttaaccatttcctgaagtgacaccttctctgaa |
43083276 |
T |
|
| Q |
136 |
tacactatttttatacacatcacatccatattttattaatgaatatcctaaagatattattagcagtttcctttg |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43083275 |
tacactatttttatacacatcacatccatattttattaatgaatatcctaaagatattattagcagtttcctttg |
43083201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University