View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10756_high_4 (Length: 391)
Name: NF10756_high_4
Description: NF10756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10756_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 13 - 376
Target Start/End: Original strand, 31033191 - 31033550
Alignment:
| Q |
13 |
aaaaatttagaattgacatcaacttcctttaaccaatctattctaagttttttgcgactgaatacctgaatgcaatttgaataaagttgtttcatctgtt |
112 |
Q |
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| T |
31033191 |
aaaaatttagaattgacatcaacttcctttaaccaatctattctaagttttttgcgactgaatacctgaatgcaatttgaataaagttgtttcatctgct |
31033290 |
T |
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| Q |
113 |
gataaagaatgaagctcttccatctcctccgcttgaatcatttgcannnnnnntttaatatccaagaaagacatacaatctttaaccaaccgaattcttc |
212 |
Q |
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| T |
31033291 |
gataaagaatgaaactcttccatctcatccgcttgaatcatttgcacctcccctttaatatccaagaaagacatacgatctttaaccaaccgaattctac |
31033390 |
T |
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| Q |
213 |
cttctatgttttgggtatggctttgatgccaactcttcagacatcccttatcagtttaaatttctctttcaacacataaccactccacccatgtacctga |
312 |
Q |
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|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31033391 |
cttctaagttttgggtatggttttgatgccaactcttcagacatcccttatcagtttaaatttctctttcaacacataaccactccacccatgtacctga |
31033490 |
T |
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| Q |
313 |
aaagacgtccatttctatgtgacatgcatactctttataccttgaaagatcagcccaatatttt |
376 |
Q |
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|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
31033491 |
aaagacgtccatttctatgtga----catactctttatatcttgaaagatcagcccaatatttt |
31033550 |
T |
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