View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10756_high_7 (Length: 314)

Name: NF10756_high_7
Description: NF10756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10756_high_7
NF10756_high_7
[»] chr5 (4 HSPs)
chr5 (16-303)||(9197877-9198164)
chr5 (158-284)||(26449066-26449190)
chr5 (181-272)||(32528994-32529083)
chr5 (164-219)||(3522516-3522571)
[»] chr8 (3 HSPs)
chr8 (143-303)||(33304047-33304205)
chr8 (28-89)||(32897512-32897574)
chr8 (164-284)||(32897613-32897731)
[»] chr1 (3 HSPs)
chr1 (164-284)||(42471282-42471404)
chr1 (165-220)||(44108879-44108934)
chr1 (181-272)||(5715034-5715123)
[»] chr2 (3 HSPs)
chr2 (160-261)||(40626995-40627094)
chr2 (158-262)||(19427141-19427243)
chr2 (162-220)||(29463222-29463280)
[»] scaffold0377 (1 HSPs)
scaffold0377 (158-220)||(11929-11991)
[»] chr7 (2 HSPs)
chr7 (158-220)||(42078130-42078192)
chr7 (158-220)||(37970443-37970505)
[»] chr4 (3 HSPs)
chr4 (158-220)||(14518556-14518618)
chr4 (241-296)||(26634578-26634632)
chr4 (159-220)||(171929-171990)
[»] chr3 (3 HSPs)
chr3 (163-272)||(40417621-40417727)
chr3 (165-220)||(20525556-20525611)
chr3 (192-267)||(48935746-48935819)
[»] chr6 (1 HSPs)
chr6 (177-252)||(31799395-31799468)


Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 303
Target Start/End: Original strand, 9197877 - 9198164
Alignment:
Q  16 gtttcatcagctgaagatggaggctcgatggcggtgttcaaagacaatgaatctggttgatggaatgacgaagggggcaaatggtggagatgaatatgcc 115  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9197877 gtttcatcggctgaagatggaggctcgatggcggtgttcaaagacaatgaatctggttgatggaatgacgaagggggcaaatggtggagatgaatatgcc 9197976  T
Q  116 ccagcgttgttaannnnnnnnnccccttcatgttaataacacgtgcatcaaacacataatatgataaaataatattatcatctttgttatcatgtgtgca 215  Q
    ||| |||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  9197977 ccaacgttgttaatttctttttttccttcatgttaataacacgtgcatcaaacacataatatgataaaataatattatcatcttttttatcatgtgtgca 9198076  T
Q  216 ccaaaaacttatgacatgataagtgtctatcttatccctatcatatcctatctttattcattttctaattttatcacgtctctttcat 303  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||  ||||||||||    
T  9198077 ccaagaacgtatgacatgataagtgtctatcttatccctatcatatcctatctttattcattttttaatcttatcatatctctttcat 9198164  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 158 - 284
Target Start/End: Original strand, 26449066 - 26449190
Alignment:
Q  158 gtgcatcaaacacataatatgataaaataatattatcatctttgttatcatgtgtgcaccaaaaacttatgacatgataagtgtctatcttatccctatc 257  Q
    ||||| ||||||||| ||| |||||||||||  |||||||||| ||||||| |||||||||||| |  |||| | |||||||||||||| | || |||||    
T  26449066 gtgcaacaaacacatgataggataaaataatgatatcatctttcttatcatatgtgcaccaaaagc--atgataggataagtgtctatcatgtcactatc 26449163  T
Q  258 atatcctatctttattcattttctaat 284  Q
    ||||| ||| ||||| |||||||||||    
T  26449164 atatcatatttttatccattttctaat 26449190  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 181 - 272
Target Start/End: Complemental strand, 32529083 - 32528994
Alignment:
Q  181 aaaataatattatcatctttgttatcatgtgtgcaccaaaaacttatgacatgataagtgtctatcttatccctatcatatcctatctttat 272  Q
    ||||||||| |||||| ||||||||||| | ||||||||| ||  |||| |  ||||||||||||| ||||  |||||||||||||||||||    
T  32529083 aaaataatactatcatatttgttatcatctatgcaccaaacac--atgatagaataagtgtctatcatatcagtatcatatcctatctttat 32528994  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 3522571 - 3522516
Alignment:
Q  164 caaacacataatatgataaaataatattatcatctttgttatcatgtgtgcaccaa 219  Q
    ||||||||  ||| ||||||||||| ||||||||||| |||||||| |||||||||    
T  3522571 caaacacacgataggataaaataatgttatcatcttttttatcatgcgtgcaccaa 3522516  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 143 - 303
Target Start/End: Complemental strand, 33304205 - 33304047
Alignment:
Q  143 tcatgttaataacacgtg--catcaaacacataatatgataaaataatattatcatctttgttatcatgtgtgcaccaaaaacttatgacatgataagtg 240  Q
    |||||||||||||| |||  ||||||| | |||||| ||||||| ||||||||||||||| ||||||||||| || |||| ||  || | || |||| ||    
T  33304205 tcatgttaataacaagtgtgcatcaaatatataataagataaaacaatattatcatctttcttatcatgtgtacatcaaacac--ataatataataaatg 33304108  T
Q  241 tctatcttatccctatcatatcctatctttattcattttctaattttatcacgtctctttcat 303  Q
    ||||||  ||| | ||||||| |||||||||| ||||||||||| |||||  |||||| ||||    
T  33304107 tctatc-catcacgatcatat-ctatctttatccattttctaatcttatctagtctctatcat 33304047  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 32897512 - 32897574
Alignment:
Q  28 gaagatggaggctcgatggcggtgttcaaagacaatgaatctggt-tgatggaatgacgaagg 89  Q
    |||||||||||||||| | ||||| ||||||||||||||| |||| |||||||| || |||||    
T  32897512 gaagatggaggctcgacgacggtgctcaaagacaatgaatttggtatgatggaacgaggaagg 32897574  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 284
Target Start/End: Original strand, 32897613 - 32897731
Alignment:
Q  164 caaacacataatatgataaaataatattatcatctttgttatcatgtgtgcaccaaaaacttatgacatgataagtgtctatcttatccctatcatatcc 263  Q
    |||||| || ||| ||||||| ||| ||||| ||||| ||||||| | |||||||||  | ||||| | ||||| |||||||| | || ||||| ||||     
T  32897613 caaacatatgataggataaaaaaatgttatcctctttcttatcatatctgcaccaaa--cgtatgataggataaatgtctatcatgtcactatcctatca 32897710  T
Q  264 tatctttattcattttctaat 284  Q
    |||||| || |||||||||||    
T  32897711 tatcttgatccattttctaat 32897731  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 284
Target Start/End: Complemental strand, 42471404 - 42471282
Alignment:
Q  164 caaacacataatatgata----aaataatattatcatctttgttatcatgtgtgcaccaaaaacttatgacatgataagtgtctatcttatccctatcat 259  Q
    ||||||||| ||||||||    |||||||  |||||| ||| ||||||||||||||||||| ||  |||| ||||||| |||||||| ||||  ||||||    
T  42471404 caaacacatgatatgatatgataaataatgctatcatatttcttatcatgtgtgcaccaaacac--atgatatgataaatgtctatcatatcattatcat 42471307  T
Q  260 atcctatctttattcattttctaat 284  Q
    ||| |||||||||  ||||||||||    
T  42471306 atcatatctttatctattttctaat 42471282  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 220
Target Start/End: Original strand, 44108879 - 44108934
Alignment:
Q  165 aaacacataatatgataaaataatattatcatctttgttatcatgtgtgcaccaaa 220  Q
    ||||||||||||||||||||||||  |||||| ||| ||||||||||||| |||||    
T  44108879 aaacacataatatgataaaataatgctatcatgtttattatcatgtgtgccccaaa 44108934  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 272
Target Start/End: Complemental strand, 5715123 - 5715034
Alignment:
Q  181 aaaataatattatcatctttgttatcatgtgtgcaccaaaaacttatgacatgataagtgtctatcttatccctatcatatcctatctttat 272  Q
    ||||||||||||| || ||| |||||||| |||||||  |||| ||||| ||||||| | ||||||||| | ||||||| ||  ||||||||    
T  5715123 aaaataatattataatatttattatcatgcgtgcacc--aaacatatgatatgataaatatctatcttaccactatcatgtctcatctttat 5715034  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 160 - 261
Target Start/End: Original strand, 40626995 - 40627094
Alignment:
Q  160 gcatcaaacacataatatgataaaataatattatcatctttgttatcatgtgtgcaccaaaaacttatgacatgataagtgtctatcttatccctatcat 259  Q
    ||||||||||||| |||| ||||||||| | |||| || || |||||||||||| |||||| ||  |||| |||||||||||||||||| |  |||||||    
T  40626995 gcatcaaacacatgatataataaaataagaatatcctccttcttatcatgtgtgtaccaaacac--atgaaatgataagtgtctatcttgttactatcat 40627092  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 262
Target Start/End: Original strand, 19427141 - 19427243
Alignment:
Q  158 gtgcatcaaacacataatatgataaaataatattatcatctttgttatcatgtgtgcaccaaaaacttatgacatgataagtgtctatcttatccctatc 257  Q
    ||||| |||||||| |||||||||| |||||  |||||| ||| ||||||| | |||||||||  | ||||||| ||||  ||||||||||||| ||||     
T  19427141 gtgcaccaaacacaaaatatgataacataatgctatcatatttattatcatatatgcaccaaa--cgtatgacacgatagatgtctatcttatcactatg 19427238  T
Q  258 atatc 262  Q
    |||||    
T  19427239 atatc 19427243  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 29463222 - 29463280
Alignment:
Q  162 atcaaacacataatatgataaaataatattatcatctttgttatcatgtgtgcaccaaa 220  Q
    |||||||| || |||||||||||||||  |||||||||| ||||||| ||| |||||||    
T  29463222 atcaaacatatgatatgataaaataatgctatcatctttcttatcatatgtacaccaaa 29463280  T

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Target: scaffold0377 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0377
Description:

Target: scaffold0377; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 220
Target Start/End: Original strand, 11929 - 11991
Alignment:
Q  158 gtgcatcaaacacataatatgataaaataatattatcatctttgttatcatgtgtgcaccaaa 220  Q
    |||||||||| |||| ||||||||||||||| ||||||| |||  ||||||| ||||||||||    
T  11929 gtgcatcaaaaacatgatatgataaaataatgttatcatatttcctatcatgcgtgcaccaaa 11991  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 220
Target Start/End: Original strand, 42078130 - 42078192
Alignment:
Q  158 gtgcatcaaacacataatatgataaaataatattatcatctttgttatcatgtgtgcaccaaa 220  Q
    |||||||||| | || ||||||||||||||| ||||||| ||| |||||||| ||||||||||    
T  42078130 gtgcatcaaaaatatgatatgataaaataatgttatcatatttcttatcatgcgtgcaccaaa 42078192  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 220
Target Start/End: Original strand, 37970443 - 37970505
Alignment:
Q  158 gtgcatcaaacacataatatgataaaataatattatcatctttgttatcatgtgtgcaccaaa 220  Q
    ||||| ||||| ||| ||| |||||||||||  |||||||||| |||||| ||||||||||||    
T  37970443 gtgcaccaaacgcatgataggataaaataatgctatcatcttttttatcaagtgtgcaccaaa 37970505  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 220
Target Start/End: Original strand, 14518556 - 14518618
Alignment:
Q  158 gtgcatcaaacacataatatgataaaataatattatcatctttgttatcatgtgtgcaccaaa 220  Q
    ||||| |||||| || ||||||||||||||||||||||||||| ||||| |||| ||| ||||    
T  14518556 gtgcaccaaacatatgatatgataaaataatattatcatctttcttatcttgtgcgcatcaaa 14518618  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 296
Target Start/End: Complemental strand, 26634632 - 26634578
Alignment:
Q  241 tctatcttatccctatcatatcctatctttattcattttctaattttatcacgtct 296  Q
    ||||||||||| |||||||||| ||||||||| |||||||||||| ||||| ||||    
T  26634632 tctatcttatcactatcatatc-tatctttatccattttctaattctatcatgtct 26634578  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 171990 - 171929
Alignment:
Q  159 tgcatcaaacacataatatgataaaataatattatcatctttgttatcatgtgtgcaccaaa 220  Q
    ||||| ||| |||| ||||||||||||||||| || || ||||||||| |||||||| ||||    
T  171990 tgcataaaatacatgatatgataaaataatatgataatatttgttatcttgtgtgcatcaaa 171929  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 272
Target Start/End: Original strand, 40417621 - 40417727
Alignment:
Q  163 tcaaacacataatatgataaaataatattatcatctttgttatcatgtgtgcaccaaaaacttatgacatgataagtgtctatcttatccctatcatatc 262  Q
    |||||||||| |||||||||||||||  |||||| ||| |||||||| |||||||  |||| ||||| ||||||| ||| |||| | || || |||||||    
T  40417621 tcaaacacatgatatgataaaataatgctatcatatttcttatcatgcgtgcacc--aaacatatgatatgataaatgt-tatcatgtcactgtcatatc 40417717  T
Q  263 ctatctttat 272  Q
    ||||| ||||    
T  40417718 ctatccttat 40417727  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 220
Target Start/End: Original strand, 20525556 - 20525611
Alignment:
Q  165 aaacacataatatgataaaataatattatcatctttgttatcatgtgtgcaccaaa 220  Q
    ||||| || |||||||||||||||| |||||||||| ||||||| | |||||||||    
T  20525556 aaacatatgatatgataaaataataatatcatctttcttatcatatctgcaccaaa 20525611  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 267
Target Start/End: Complemental strand, 48935819 - 48935746
Alignment:
Q  192 atcatctttgttatcatgtgtgcaccaaaaacttatgacatgataagtgtctatcttatccctatcatatcctatc 267  Q
    ||||||||| ||||||||||| ||||||| ||  |||| | |||||||||||||| | || ||||| |||||||||    
T  48935819 atcatctttcttatcatgtgtacaccaaacac--atgataggataagtgtctatcatgtcactatcctatcctatc 48935746  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 252
Target Start/End: Complemental strand, 31799468 - 31799395
Alignment:
Q  177 tgataaaataatattatcatctttgttatcatgtgtgcaccaaaaacttatgacatgataagtgtctatcttatcc 252  Q
    ||||||||||||| |||||| ||| ||||||| ||||||   ||||| ||||| |||||||||||||||| |||||    
T  31799468 tgataaaataatactatcatatttcttatcatatgtgca--taaaacatatgatatgataagtgtctatcctatcc 31799395  T

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