View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10756_high_9 (Length: 295)
Name: NF10756_high_9
Description: NF10756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10756_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 24 - 277
Target Start/End: Complemental strand, 5663378 - 5663125
Alignment:
| Q |
24 |
cacatgattctcataagcagtttatagtaacatgttagcaatatcagcatagaagaaaactattataacaacagtagtataataacaggaggaagatgaa |
123 |
Q |
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| T |
5663378 |
cacatgattctcataagcagattatagtaacatgttagcaatatcagcacagaagaaaactattataacaacagtagtataataac---agaaagatgaa |
5663282 |
T |
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| Q |
124 |
gaagttataacccaaggcagcagaacataactactggctcgtgagtacc-aaattgacaggaaatggaggagaacgtgaagctaa--tgtctttaactac |
220 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||| ||||||||||| | |
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| T |
5663281 |
gaagttataaaccaaggcagcagaacataactactggctcgtgagtaccaaaactgacaggaaatggaggagaatgtgaagctaatgtgtctttaacttc |
5663182 |
T |
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| Q |
221 |
ttgtgagaagcgaccatggtcttaccggtgacagaagcttcgaagtcggagcgagat |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5663181 |
ttgtgagaagcgaccatggtcttaccggtgacagaagcttcgaagtcggagcgagat |
5663125 |
T |
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Target: chr3 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 135 - 270
Target Start/End: Complemental strand, 52131504 - 52131371
Alignment:
| Q |
135 |
ccaaggcagcagaacataactactggctcgtgagtaccaaattgacaggaaatggaggagaacgtgaagcta-atg-tctttaactacttgtgagaagcg |
232 |
Q |
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| T |
52131504 |
ccaaggcagcagaacataact----tctcgtgagtaccaaattgacaggaaatggaggataacgtgacgctacatgttctttgacttcttgtgagaagcg |
52131409 |
T |
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| Q |
233 |
accatggtcttaccggtgacagaagcttcgaagtcgga |
270 |
Q |
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| T |
52131408 |
accatggtcttaccgatgacagaagcttcgaaatcgga |
52131371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 223 - 277
Target Start/End: Original strand, 11649155 - 11649209
Alignment:
| Q |
223 |
gtgagaagcgaccatggtcttaccggtgacagaagcttcgaagtcggagcgagat |
277 |
Q |
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| T |
11649155 |
gtgagaagcgaccatggtcttaccgatgacagaagcttcgaagtcggagcgagat |
11649209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 168 - 277
Target Start/End: Complemental strand, 22007884 - 22007769
Alignment:
| Q |
168 |
gtaccaaattgacaggaaatggaggagaa----cgtgaagcta-atgt-ctttaactacttgtgagaagcgaccatggtcttaccggtgacagaagcttc |
261 |
Q |
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||||||||||||||||||||||||||||| |||||||||| |||| |||||||| ||||||| |||||||||||||||| || ||||||||| || |
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| T |
22007884 |
gtaccaaattgacaggaaatggaggagaatcaacgtgaagctacatgttctttaacttcttgtgaaaagcgaccatggtcttgacgatgacagaagtttt |
22007785 |
T |
|
| Q |
262 |
gaagtcggagcgagat |
277 |
Q |
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||||||| |||||||| |
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| T |
22007784 |
gaagtcgaagcgagat |
22007769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 168
Target Start/End: Original strand, 11649126 - 11649159
Alignment:
| Q |
135 |
ccaaggcagcagaacataactactggctcgtgag |
168 |
Q |
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||||||||||||||||||||| |||||||||||| |
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| T |
11649126 |
ccaaggcagcagaacataactgctggctcgtgag |
11649159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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