View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10756_low_1 (Length: 656)
Name: NF10756_low_1
Description: NF10756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10756_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 23 - 634
Target Start/End: Original strand, 35200815 - 35201428
Alignment:
| Q |
23 |
agtcttttaattacaaatgcaaagtgtgacctcgttgtgtaattcaattgagtcttcttgagatgtaaagagccacatggtggttttttgtccctttcat |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35200815 |
agtcttttaattacaaatgcaaagtgtgacctcgttgtgtaattcaattgagtcttcttgagatgtaaagagccacatggtggttttttgtccctttcat |
35200914 |
T |
|
| Q |
123 |
ttggaacttttagtacatcatataaacatattgattgttcttgtttcannnnnnnnnnnnn-gtttatcattatatacttctgttaatttgtctctccct |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35200915 |
ttggaacttttagtacatcatataaacatattgattgttcttgtttcattttttttatttttgtttatcattatatacttctgttaatttgtctctccct |
35201014 |
T |
|
| Q |
222 |
ttatgaataaatactatcttaatagagaaaccatctttattacctaatatatacgtatgtttatctgtaaaaggtccatgcaattgtcttatattttttg |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35201015 |
ttatgaataaatactatcttaatagagaaaccatctttattacctaatatatacgtatgtttatctgtaaaaggtccatgcaattgtcttatattttttg |
35201114 |
T |
|
| Q |
322 |
ttcatgttattaagatcttgatactaacaacttgaaagaaaa-gaaaatgctatnnnnnnncttgacctaagttacattatttttgaattatatactata |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35201115 |
ttcatgttattaagatcttgatactaacaacttgaaagaaaaagaaaatgctataaaaaaacttgacctaagttacattatttttgaattatatactata |
35201214 |
T |
|
| Q |
421 |
ctaattaaattaaatattagaaaattttgaagtgggattttgccttattacaacatgcctagggctttgagcaggtcttagggattccctcaatgtatct |
520 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35201215 |
ctaattaaattaaatattagaaaaatttgaagtgggattttgccttattacaacatgcctagggctttgagcaggtcttagggattccctcaatgtatct |
35201314 |
T |
|
| Q |
521 |
ctctgcacaaaagaatgttacgttggagtatatatgtgggtgtgtgttctttatttttactannnnnnnnnctttattgaaccactcaagattcatccta |
620 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
35201315 |
ctctgcacaaaagaatgttacgttggagtatatatgtgggtgtgtgttctttatttttactatttttttttctttattgaaccactcaagattcatccta |
35201414 |
T |
|
| Q |
621 |
atcacgctttacct |
634 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
35201415 |
atcacgctttacct |
35201428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University