View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10756_low_14 (Length: 256)
Name: NF10756_low_14
Description: NF10756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10756_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 30431143 - 30430912
Alignment:
| Q |
18 |
atgtcaatcatctaagatgattaatcttttgtaaatgtcaacttaagctcaaagttgataaaactattatttttaccaatttgttttctctgaatgtgat |
117 |
Q |
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| T |
30431143 |
atgtcaatcatctaagatgattaatcttttgtaaatgtcaacttaagctcaaagttgataaaactattatttttaccaatttattttctccgaatgtgat |
30431044 |
T |
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| Q |
118 |
ttctcacttatttaatgattaatatttttgtatccatgatgctgaagaaaaagaaatcactagtaagaaaagaagcaagaatgactcattgcctgctgat |
217 |
Q |
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| T |
30431043 |
ttctcacttatttaatgattaatatttttgtatccatgatgctgaagaaaaagaaatcactagtaagaaaagaagcaagaatgactcattgcctgctgat |
30430944 |
T |
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| Q |
218 |
catcatgcacaaaatcaatcggattcttctct |
249 |
Q |
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| T |
30430943 |
catcacgcacaaaatcaatcgaattcttctct |
30430912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 30415989 - 30415796
Alignment:
| Q |
17 |
catgtcaatcatctaagatgattaatcttttgtaaatgtcaacttaagctcaaagttgataaaactattatttttaccaatttgttttctctgaatgtga |
116 |
Q |
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| T |
30415989 |
catgttaatcatctaggatgattaatcttt-gtaaatgccaacttaatccccaagttgataaaactattatttttaccaatttgttttctctgaatgcga |
30415891 |
T |
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| Q |
117 |
ttt-ctcacttatttaatgattaatatttttgtatccatgatgctgaagaaaaagaaatcactagtaagaaaagaagcaagaatgactcattgcc |
210 |
Q |
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| T |
30415890 |
ttttctcacttatttaatgattaatatttttgtatccatgatgcagaaaaagaagaagtcactagtaaggaaagaagcaagaatgactcattgcc |
30415796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 30419277 - 30419084
Alignment:
| Q |
18 |
atgtcaatcatctaagatgattaatcttttgtaaatgtcaacttaagctcaaagttgataaaactattatttttaccaatttgttttctctgaatgtgat |
117 |
Q |
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||||||||||||| |||||||||||||| ||||||| |||||||| | | |||||||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
30419277 |
atgtcaatcatcttggatgattaatcttt-gtaaatgccaacttaatccccaagttgataaaactattatttttatcaatttgttttctccgaatgtgat |
30419179 |
T |
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| Q |
118 |
tt-ctcacttatttaatgattaatatttttgtatccatgatgctgaagaaaaagaaatcactagtaagaaaagaagcaagaatgactcattgcct |
211 |
Q |
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| T |
30419178 |
tttctcacttatttaatgatcaatatttttgtatccatgatgtagaaaaagaagaagtcactagtaaggaatgaagcaagaatgactcattgcct |
30419084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 71 - 166
Target Start/End: Complemental strand, 30448219 - 30448121
Alignment:
| Q |
71 |
gttgataaaactattatttttaccaatttgttttctctgaatgtgatttctcact---tatttaatgattaatatttttgtatccatgatgctgaagaa |
166 |
Q |
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| T |
30448219 |
gttgataaaactattatatttaccaatttgttttctccgaatattatttctcacttattatttaatgattaatatttttgtatccatgttgcagaagaa |
30448121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 75 - 166
Target Start/End: Complemental strand, 30431619 - 30431528
Alignment:
| Q |
75 |
ataaaactattatttttaccaatttgttttctctgaatgtgatttct-cacttatttaatgattaatatttttgtatccatgatgctgaagaa |
166 |
Q |
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| T |
30431619 |
ataaaactattattat-accaatttgtttttcctgaacgtcattttttcacttatttaatgattaatattttcatatccatgttgcagaagaa |
30431528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 188
Target Start/End: Complemental strand, 30415141 - 30415030
Alignment:
| Q |
75 |
ataaaactattatttttaccaa----tttgttttctctgaatgtga-tttctcacttatttaatgattaatatttttgtatccatgatgctgaagaaaaa |
169 |
Q |
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|||||||||||||||||||||| |||||||||| |||||| | ||||||||||||||||||| |||||||| |||| |||||||||| || |
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| T |
30415141 |
ataaaactattatttttaccaattggtttgttttcttcgaatgtcattttctcacttatttaatga-------ttttgtattcatgttgctgaagaagaa |
30415049 |
T |
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| Q |
170 |
gaaatcactagtaagaaaa |
188 |
Q |
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| T |
30415048 |
gaagtcattattaagaaaa |
30415030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 166
Target Start/End: Complemental strand, 30430085 - 30429991
Alignment:
| Q |
73 |
tgataaaactatta-tttttaccaatttgttttctctgaatgtgattt-ctcacttatttaatgattaatatttttgtatccatgatgctgaagaa |
166 |
Q |
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||||||||||||| |||||||||||| ||||| | |||||| |||| |||||||||||||||||||||||| || ||| |||| ||| |||||| |
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| T |
30430085 |
tgataaaactatttctttttaccaatt-gtttttttagaatgtcattttctcacttatttaatgattaatattgttttatgcatgttgcagaagaa |
30429991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 198
Target Start/End: Complemental strand, 30447242 - 30447120
Alignment:
| Q |
75 |
ataaaactattatttttaccaatttgttttc--tctgaatgtgatttctcacttatttaatgattaatatttttgtatccatgatgctgaagaaaaagaa |
172 |
Q |
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|||||||||||||||||||||||| ||||| || ||||| ||||| | |||||||||||||| |||| || ||| | ||| || |||| ||||| |
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| T |
30447242 |
ataaaactattatttttaccaattatttttctgtcataatgtcatttcacgcttatttaatgattgatatcattatatgc---atgttgtagaagaagaa |
30447146 |
T |
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| Q |
173 |
atcactagtaagaaaagaagcaagaa |
198 |
Q |
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| T |
30447145 |
ttcactagtaagaaaaaaagaaagaa |
30447120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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