View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10756_low_15 (Length: 252)
Name: NF10756_low_15
Description: NF10756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10756_low_15 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 14 - 252
Target Start/End: Complemental strand, 20015819 - 20015581
Alignment:
| Q |
14 |
gttttttccttcaatcggtaactgatgctaacagagttgttgaaattatgtccaagctcggtgttaagcctgatgtttttagttttggttttcttgctta |
113 |
Q |
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| T |
20015819 |
gtttttgccttcaatcggtaactgatgctaacagagttgttgaaattatgtccaagctcggtgttaagcctgatgtgtttagttttggatttcttgctta |
20015720 |
T |
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| Q |
114 |
tttatatgcacttaaagggttacaagataagatagatgagttaaaattttttatggttggttttggttattccaaaaacaataaatgtttttattctaat |
213 |
Q |
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| T |
20015719 |
tttatatgcacttaaagggttacaagataagatagatgagttaaaagttttgatggttggttttggctactccaaaaacaataaatgtttttattctaat |
20015620 |
T |
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| Q |
214 |
ttgattagtggctatgttaagtctgctaatttagtttct |
252 |
Q |
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| T |
20015619 |
ttgattagtggctatgttaagtctgctaatttagtttct |
20015581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 14 - 252
Target Start/End: Original strand, 19700796 - 19701034
Alignment:
| Q |
14 |
gttttttccttcaatcggtaactgatgctaacagagttgttgaaattatgtccaagctcggtgttaagcctgatgtttttagttttggttttcttgctta |
113 |
Q |
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| T |
19700796 |
gtttttgccttcaatcggtaactgatgctaacagagttgttgaaattatgtccaagctcggtgttaagcctgatgtgtttagttttggatttcttgctta |
19700895 |
T |
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| Q |
114 |
tttatatgcacttaaagggttacaagataagatagatgagttaaaattttttatggttggttttggttattccaaaaacaataaatgtttttattctaat |
213 |
Q |
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| T |
19700896 |
tttatatgcacttaaagggttacaagataagatagacgagttaaaagttttgatggttggttttggctactccaaaaacaataaatgtttttattctaat |
19700995 |
T |
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| Q |
214 |
ttgattagtggctatgttaagtctgctaatttagtttct |
252 |
Q |
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| T |
19700996 |
ttgattagtggctatgttaagtctgctaatttagtttct |
19701034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 35 - 153
Target Start/End: Original strand, 24464926 - 24465048
Alignment:
| Q |
35 |
ctgatgctaacagagttgttgaaattatgtccaagctcggtgttaagcctgatgtttttagttttggttttcttgcttatttatat----gcacttaaag |
130 |
Q |
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| T |
24464926 |
ctgatgctgacagagttattggaattatgacaaagcttggtgttaagccagatgagtttagttttggatttcttgcttatttatatgcacgcacttaaag |
24465025 |
T |
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| Q |
131 |
ggttacaagataagatagatgag |
153 |
Q |
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| T |
24465026 |
ggttacaagataagatagatgag |
24465048 |
T |
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