View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10756_low_19 (Length: 244)
Name: NF10756_low_19
Description: NF10756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10756_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 17 - 226
Target Start/End: Complemental strand, 33699017 - 33698808
Alignment:
| Q |
17 |
agacagagaggatcccgacattgaaagagaactgccaataatcaaaccaaaccaaacaataatgaaggagaaggacccatgacaataaattcatgattag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33699017 |
agacagagaggatcccgacattgaaagagaactgccaataatcaaaccaaaccaaacaataatgaaggagaaggacccatgacaataaattcatgattag |
33698918 |
T |
|
| Q |
117 |
gaccgacaaatgaaaacaaaattcaacgctattcaaacagtatccaataagacaatatatttcatctttgcttctagaaaatatagccatcgtactacct |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33698917 |
gaccgacaaatgaaaacaaaattcaacgctattcaaacagtatccaataagacaatatatttcatctttgcttcttgaaaatatagccatcgtactacct |
33698818 |
T |
|
| Q |
217 |
ccgatcctat |
226 |
Q |
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|||||||||| |
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| T |
33698817 |
ccgatcctat |
33698808 |
T |
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