View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10756_low_28 (Length: 220)
Name: NF10756_low_28
Description: NF10756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10756_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 12 - 201
Target Start/End: Original strand, 6837991 - 6838180
Alignment:
| Q |
12 |
gcagagacaaagaagtaccataaccaacgtgtgaagaaatggtttgatactctaaaacatgaggtatatgaagtagatcaattgttggatgagattgata |
111 |
Q |
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| T |
6837991 |
gcagagacaaagaagtaccaaaaccaaaatgtgaagaagtggtttgataatctaaaacatgaggtatatgaagtagatcaattgttggatgagattgata |
6838090 |
T |
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| Q |
112 |
caaatgtaaaactcaagagcaaggatatgttgggatcaaaggttaaatactggctttcagctatcacaaatccatttgaatctaggatca |
201 |
Q |
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| T |
6838091 |
caaatgtaaaactcaagagcaaggatatgttgggatcaaaggttaaatacttgctttcagctatcactaatccatttgaatctaggatca |
6838180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 12 - 135
Target Start/End: Complemental strand, 8472482 - 8472359
Alignment:
| Q |
12 |
gcagagacaaagaagtaccataaccaacgtgtgaagaaatggtttgatactctaaaacatgaggtatatgaagtagatcaattgttggatgagattgata |
111 |
Q |
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|||||||||||||||||||| |||||| ||| ||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
8472482 |
gcagagacaaagaagtaccagaaccaaaatgttaagaattggcttgatcgtctaaaacatgaggtatatgaagtagatcaattgttggatgagtttgata |
8472383 |
T |
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| Q |
112 |
caaatgtaaaactcaagagcaagg |
135 |
Q |
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||| |||| ||| |||||||||| |
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| T |
8472382 |
caagtgtacaacgaaagagcaagg |
8472359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 6572403 - 6572506
Alignment:
| Q |
12 |
gcagagacaaagaagtaccataaccaacgtgtgaagaaatggtttgatactctaaaacatgaggtatatgaagtagatcaattgttggatgagattgata |
111 |
Q |
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||||||||||| ||||||| |||| | ||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
6572403 |
gcagagacaaaacagtaccaaaacccaaacgtgaagatttggcttgatcgtctaaaacatgaggtatatgaagtagatcaattgttggatgagattgcta |
6572502 |
T |
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| Q |
112 |
caaa |
115 |
Q |
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|||| |
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| T |
6572503 |
caaa |
6572506 |
T |
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