View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10756_low_3 (Length: 394)
Name: NF10756_low_3
Description: NF10756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10756_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 4004858 - 4005048
Alignment:
| Q |
19 |
tctccaccaccacagcactattgctcctcttcactatctacttctattgtattctaatttctatgtatgtttgccatgatttggttgaaacatcaaagtg |
118 |
Q |
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| T |
4004858 |
tctccaccaccacagcactattgctcctcttcactatctacttctattgcattctcatttctatgtatgtttgccatgatttggttgaaacttcaaagtg |
4004957 |
T |
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| Q |
119 |
taatttttgcaaaattatgatagctcgttgtacttccatagatccaaacatgcacttggacactctaccattgtcaccaaacaccctccac |
209 |
Q |
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| T |
4004958 |
taatttttgcaaaattatgatagctccttgtgcttccatagatccaaacatgcacttggacactctaccattgtcaccaaacaccctccac |
4005048 |
T |
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Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 242 - 375
Target Start/End: Original strand, 4006151 - 4006286
Alignment:
| Q |
242 |
ctatcacattaaaaaattatcaacatatttgttttcccgtcagttataaacatattgaaattaatacaatcacatacacacaaaac-agt--nnnnnnnn |
338 |
Q |
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| T |
4006151 |
ctatcacattaaaaaattatcaacatatttgttttcc-gtcagttataaacatattgaaattagtacaatcatatacacacaaaacaagtaaaaaaaaaa |
4006249 |
T |
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| Q |
339 |
nctgcattcaaacatgacctgctcgaattcctacaca |
375 |
Q |
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| T |
4006250 |
actgcattcaaacatgacctgctcgaattcctacaca |
4006286 |
T |
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