View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10756_low_30 (Length: 216)

Name: NF10756_low_30
Description: NF10756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10756_low_30
NF10756_low_30
[»] chr2 (3 HSPs)
chr2 (59-201)||(28165910-28166051)
chr2 (15-201)||(44904741-44904925)
chr2 (118-186)||(5696052-5696121)
[»] chr7 (5 HSPs)
chr7 (59-201)||(38756914-38757057)
chr7 (118-190)||(5975334-5975406)
chr7 (60-140)||(20207950-20208029)
chr7 (120-186)||(5974451-5974517)
chr7 (118-179)||(19639674-19639735)
[»] chr1 (4 HSPs)
chr1 (59-201)||(40767875-40768017)
chr1 (59-201)||(13228936-13229079)
chr1 (59-105)||(9419557-9419602)
chr1 (118-187)||(43882361-43882431)
[»] chr4 (3 HSPs)
chr4 (17-201)||(34538341-34538514)
chr4 (73-201)||(11154459-11154588)
chr4 (118-186)||(20946168-20946237)
[»] chr3 (3 HSPs)
chr3 (17-103)||(3149783-3149866)
chr3 (118-186)||(1677290-1677359)
chr3 (60-181)||(27661377-27661500)
[»] chr8 (2 HSPs)
chr8 (59-133)||(44690296-44690369)
chr8 (118-186)||(7274334-7274403)


Alignment Details
Target: chr2 (Bit Score: 127; Significance: 9e-66; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 59 - 201
Target Start/End: Original strand, 28165910 - 28166051
Alignment:
Q  59 cgtaatcatcaaatttttgaaattttaaacccaatctttccaccttcctctctttgatttttctctcttcttcatttcttccacgcccagcctcccatag 158  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||    
T  28165910 cgtaatcatcaaatttttgaaattttaaacccaatctttccaccttcctctctttgttttttctctcttcttcatttc-tccatgcccagcctcccatag 28166008  T
Q  159 cttgcgccctaacagcaaaaactcattttcttataccaaatgg 201  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  28166009 cttgcgccctaacagcaaaaactcattttcttataccaaatgg 28166051  T

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Target: chr2; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 15 - 201
Target Start/End: Original strand, 44904741 - 44904925
Alignment:
Q  15 atgaaaaacgcatttttacatagggactgaaattnnnnnnnnnncgtaatcatcaaatttttgaaattttaaacccaatctttccaccttcctctctttg 114  Q
    ||||||||| ||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  44904741 atgaaaaacacatttttacatagggactgaaattaaaaaaaaa-cgtaatcatcaaatttttgaaattttaaacccaatctttccaccttcatctctttg 44904839  T
Q  115 atttttctctcttcttcatttcttccacgcccagcctcccatagcttgcgccctaacagcaaaaactcattttcttataccaaatgg 201  Q
     |||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  44904840 gtttt-ctctcttcttcatttcttccatgcccagcctcccacagcttgcgccctaacagcaaaaactcattttcttataccaaatgg 44904925  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 186
Target Start/End: Complemental strand, 5696121 - 5696052
Alignment:
Q  118 tttctctcttcttcatttcttccacgcccagcctcccatagc-ttgcgccctaacagcaaaaactcattt 186  Q
    |||||||||||||||||||| |||  |||| ||| ||||||| ||||||||||||| ||||||| |||||    
T  5696121 tttctctcttcttcatttctgccattcccacccttccatagctttgcgccctaacaccaaaaacccattt 5696052  T

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Target: chr7 (Bit Score: 124; Significance: 6e-64; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 59 - 201
Target Start/End: Original strand, 38756914 - 38757057
Alignment:
Q  59 cgtaatcatcaaatttttgaaattttaaacccaatctttccaccttcctctctttgatttt-tctctcttcttcatttcttccacgcccagcctcccata 157  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||    
T  38756914 cgtaatcatcaaatttttgaaattttaaatccaatctttccaccttcctctctttgtttttttctctcttcttcatttcttccatgcccagcctcccata 38757013  T
Q  158 gcttgcgccctaacagcaaaaactcattttcttataccaaatgg 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  38757014 gcttgcgccctaacagcaaaaactcattttcttataccaaatgg 38757057  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 5975406 - 5975334
Alignment:
Q  118 tttctctcttcttcatttcttccacgcccagcctcccatagcttgcgccctaacagcaaaaactcattttctt 190  Q
    ||||||||||||| |||||| ||| ||||| |||| ||||||||||||||||||| ||||||  |||||||||    
T  5975406 tttctctcttctttatttctgccatgcccaccctctcatagcttgcgccctaacaccaaaaatccattttctt 5975334  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 20207950 - 20208029
Alignment:
Q  60 gtaatcatcaaatttttgaaattttaaacccaatctttccaccttcctctctttgatttttctctcttcttcatttcttcc 140  Q
    ||||||||| |||||| ||||||| |||  |||| ||||||||||| ||||| || ||||||| |||||||||| ||||||    
T  20207950 gtaatcatctaatttt-gaaatttaaaaatcaatatttccaccttcatctctctgttttttctttcttcttcatatcttcc 20208029  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 186
Target Start/End: Original strand, 5974451 - 5974517
Alignment:
Q  120 tctctcttcttcatttcttccacgcccagcctcccatagcttgcgccctaacagcaaaaactcattt 186  Q
    ||||||||||||||||||  || ||||| | || ||||||||||||| |||||  ||||||||||||    
T  5974451 tctctcttcttcatttctgtcatgcccaccgtctcatagcttgcgccgtaacactaaaaactcattt 5974517  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 179
Target Start/End: Complemental strand, 19639735 - 19639674
Alignment:
Q  118 tttctctcttcttcatttcttccacgcccagcctcccatagcttgcgccctaacagcaaaaa 179  Q
    ||||||||||||||||| |||||   ||||||||| ||||| |||| |||||| ||||||||    
T  19639735 tttctctcttcttcattccttccctacccagcctctcatagtttgcaccctaaaagcaaaaa 19639674  T

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Target: chr1 (Bit Score: 119; Significance: 6e-61; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 59 - 201
Target Start/End: Original strand, 40767875 - 40768017
Alignment:
Q  59 cgtaatcatcaaatttttgaaattttaaacccaatctttccaccttcctctctttgatttttctctcttcttcatttcttccacgcccagcctcccatag 158  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||    
T  40767875 cgtaatcatcaaatttttgaaaatttaaacccaatttttccaccttcctctctttgttttttatctcttcttcatttcttccatgcccagcctcccatag 40767974  T
Q  159 cttgcgccctaacagcaaaaactcattttcttataccaaatgg 201  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  40767975 cttgcgccctaacagcaaaaactcattttcttatatcaaatgg 40768017  T

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Target: chr1; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 59 - 201
Target Start/End: Complemental strand, 13229079 - 13228936
Alignment:
Q  59 cgtaatcatcaaatttttgaaattttaaacccaatctttccaccttcctctctttgattttt-ctctcttcttcatttcttccacgcccagcctcccata 157  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| || |||| ||||| ||||||||||||||||||||| |||||||||||||||    
T  13229079 cgtaatcatcaattttttgaaattttaaacccaatctttccaccttcccctatttgtttttttctctcttcttcatttcttccatgcccagcctcccata 13228980  T
Q  158 gcttgcgccctaacagcaaaaactcattttcttataccaaatgg 201  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  13228979 gcttgcgccctaacagcaaaagctcattttcttataccaaatgg 13228936  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 105
Target Start/End: Complemental strand, 9419602 - 9419557
Alignment:
Q  59 cgtaatcatcaaatttttgaaattttaaacccaatctttccaccttc 105  Q
    ||||||||||||||||| ||||||| ||| |||||||||||||||||    
T  9419602 cgtaatcatcaaatttt-gaaatttaaaaaccaatctttccaccttc 9419557  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 187
Target Start/End: Original strand, 43882361 - 43882431
Alignment:
Q  118 tttctctcttcttcatttcttccacgcccagcctcccatagc-ttgcgccctaacagcaaaaactcatttt 187  Q
    |||||||||||||||||| | |||  |||| ||| ||||||| ||||||||||||| ||||||| ||||||    
T  43882361 tttctctcttcttcatttatgccattcccacccttccatagctttgcgccctaacaccaaaaacccatttt 43882431  T

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Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 34538341 - 34538514
Alignment:
Q  17 gaaaaacgcatttttacatagggactgaaattnnnnnnnnnncgtaatcatcaaatttttgaaattttaaacccaatctttccaccttcctctctttgat 116  Q
    ||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  34538341 gaaaaacgcatttttacatagggactgaaattaaaaaaa---cgtaatcatcaaatttttgaaattttaaacccaatctttccaccttcctctctttgtt 34538437  T
Q  117 ttttctctcttcttcatttcttccacgcccagcctcccatagcttgcgccctaacagcaaaaactcattttcttataccaaatgg 201  Q
    ||||||||||||||||||||||||| |        |||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  34538438 ttttctctcttcttcatttcttccatg--------cccatagcttgcaccctaacaccaaaaactcattttcttataccaaatgg 34538514  T

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Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 73 - 201
Target Start/End: Complemental strand, 11154588 - 11154459
Alignment:
Q  73 ttttgaaattttaaacccaatctttccaccttcctctctttgattttt-ctctcttcttcatttcttccacgcccagcctcccatagcttgcgccctaac 171  Q
    ||||||||||||||||| ||| ||||||| ||||| |||||| ||||| || |||||||||||||||||  |||||| ||||||||||||||||||||||    
T  11154588 ttttgaaattttaaacctaatttttccactttcctgtctttgtttttttctatcttcttcatttcttccgtgcccagtctcccatagcttgcgccctaac 11154489  T
Q  172 agcaaaaactcattttcttataccaaatgg 201  Q
    ||||||||||||||||||||||||||||||    
T  11154488 agcaaaaactcattttcttataccaaatgg 11154459  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 186
Target Start/End: Original strand, 20946168 - 20946237
Alignment:
Q  118 tttctctcttcttcatttcttccacgcccagcctcccatagctt-gcgccctaacagcaaaaactcattt 186  Q
    |||||||||||||||||||| |||  |||| ||| ||||| ||| ||||||||||| |||||||||||||    
T  20946168 tttctctcttcttcatttctgccattcccacccttccataactttgcgccctaacaccaaaaactcattt 20946237  T

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Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 3149866 - 3149783
Alignment:
Q  17 gaaaaacgcatttttacatagggactgaaattnnnnnnnnnncgtaatcatcaaatttttgaaattttaaacccaatctttccacct 103  Q
    ||||||||||||||||||||||||||||||||          |||||||||||||||||| ||||||||||||||||||||||||||    
T  3149866 gaaaaacgcatttttacatagggactgaaattaaaaaaa---cgtaatcatcaaatttttaaaattttaaacccaatctttccacct 3149783  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 186
Target Start/End: Original strand, 1677290 - 1677359
Alignment:
Q  118 tttctctcttcttcatttcttccacgcccagcctcccatagc-ttgcgccctaacagcaaaaactcattt 186  Q
    |||||||||||||||||||| |||  |||| ||||||||||| |||||| |||||| |||||||||||||    
T  1677290 tttctctcttcttcatttctgccattcccaccctcccatagctttgcgctctaacaccaaaaactcattt 1677359  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 60 - 181
Target Start/End: Original strand, 27661377 - 27661500
Alignment:
Q  60 gtaatcatcaaatttttgaaattttaaacccaatctttccaccttcctc---tctttgatttttctctcttcttcatttcttccacgcccagcctcccat 156  Q
    |||||||| ||||||| ||||||| |||| |||  ||||||||||| ||   ||| || | ||||||||||||||||| |||||   ||||||||| |||    
T  27661377 gtaatcataaaatttt-gaaatttaaaactcaaaatttccaccttcttcgtctctctgttctttctctcttcttcattccttccctacccagcctctcat 27661475  T
Q  157 agcttgcgccctaacagcaaaaact 181  Q
    ||||||| |||||| || |||||||    
T  27661476 agcttgcaccctaaaagtaaaaact 27661500  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 133
Target Start/End: Original strand, 44690296 - 44690369
Alignment:
Q  59 cgtaatcatcaaatttttgaaattttaaacccaatctttccaccttcctctctttgatttttctctcttcttcat 133  Q
    |||||||||| |||||| ||||||| ||| ||||| ||||||||||||||||| || | ||||| ||||||||||    
T  44690296 cgtaatcatcgaatttt-gaaatttaaaaaccaatatttccaccttcctctctctgttctttctttcttcttcat 44690369  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 186
Target Start/End: Complemental strand, 7274403 - 7274334
Alignment:
Q  118 tttctctcttcttcatttcttccacgcccagcctcccatagctt-gcgccctaacagcaaaaactcattt 186  Q
    |||||||||||||||||||| |||  |||| ||| | ||||||| ||||||||||| |||||||||||||    
T  7274403 tttctctcttcttcatttctgccattcccacccttcgatagctttgcgccctaacaccaaaaactcattt 7274334  T

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