View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10756_low_31 (Length: 205)
Name: NF10756_low_31
Description: NF10756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10756_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 35032679 - 35032505
Alignment:
| Q |
19 |
cctccatcttgagtcactatgttaaacccatgcaacaatgtagcaagtgtgatttgcatcaactgaagactaaatgagattccaggacatattcttctac |
118 |
Q |
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| T |
35032679 |
cctccatcttgagtcactatgttaaacccatgcaacaatgcagcaagtgtgatttgcatcaactgaagactaaatgagattccaggacatattcttctac |
35032580 |
T |
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| Q |
119 |
ctgcgccaaatggaatcaactcaaaatgttggcccttgacatcaacatccttgtgtgttgtgtgaaatctctctg |
193 |
Q |
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| T |
35032579 |
ccacgccaaatggaatcaactcaaaatgttggcccttgacatcaacatccttgtgtgttgtgtgaaatctctctg |
35032505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 35026733 - 35026559
Alignment:
| Q |
19 |
cctccatcttgagtcactatgttaaacccatgcaacaatgtagcaagtgtgatttgcatcaactgaagactaaatgagattccaggacatattcttctac |
118 |
Q |
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| T |
35026733 |
cctccatctgaagtcactatgtcaaacccatgcaacaatgtagcaagtgttatttgcataagttgaagaccaaatgagattccaggacacattcttctac |
35026634 |
T |
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| Q |
119 |
ctgcgccaaatggaatcaactcaaaatgttggcccttgacatcaacatccttgtgtgttgtgtgaaatctctctg |
193 |
Q |
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| T |
35026633 |
ctgcaccaaatggaatcaactcgaaatgttggcctttgacatcaacatccttgtgtgttgtgaggaatctttctg |
35026559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 35040696 - 35040522
Alignment:
| Q |
19 |
cctccatcttgagtcactatgttaaacccatgcaacaatgtagcaagtgtgatttgcatcaactgaagactaaatgagattccaggacatattcttctac |
118 |
Q |
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|||||||||| |||||| |||| |||||||||||| || ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
35040696 |
cctccatctttagtcacaatgtcaaacccatgcaataaagtagcaagtgttatttgcatcagctgaagactaaatgagattccaggacatattcttctac |
35040597 |
T |
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| Q |
119 |
ctgcgccaaatggaatcaactcaaaatgttggcccttgacatcaacatccttgtgtgttgtgtgaaatctctctg |
193 |
Q |
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| T |
35040596 |
ccgcaccaaatggaatcaactcaaaatgttggcccttgacatcgacatctttgttcgttgtaaggaatctctctg |
35040522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 35048318 - 35048144
Alignment:
| Q |
19 |
cctccatcttgagtcactatgttaaacccatgcaacaatgtagcaagtgtgatttgcatcaactgaagactaaatgagattccaggacatattcttctac |
118 |
Q |
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|||||||||||||||||||| | ||| ||||||||||| || |||||||| ||||| || | || ||||| |||||| ||||| ||||| |||||||||| |
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| T |
35048318 |
cctccatcttgagtcactatatcaaatccatgcaacaaagttgcaagtgttatttgaattagcttaagaccaaatgatattccgggacacattcttctac |
35048219 |
T |
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| Q |
119 |
ctgcgccaaatggaatcaactcaaaatgttggcccttgacatcaacatccttgtgtgttgtgtgaaatctctctg |
193 |
Q |
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| T |
35048218 |
ccgcaccaaatggaatcaactcaaaatgttggcctttgagatcaatatccttgtgtgttgtgaggaatctctctg |
35048144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 166
Target Start/End: Original strand, 2261243 - 2261327
Alignment:
| Q |
82 |
tgaagactaaatgagattccaggacatattcttctacctgcgccaaatggaatcaactcaaaatgttggcccttgacatcaacat |
166 |
Q |
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| T |
2261243 |
tgaagaccaaaagatattcctggacatatccttctaccacttccaaatggtaacaactcaaaatgttgacccttggcatcaacat |
2261327 |
T |
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