View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10756_low_4 (Length: 391)
Name: NF10756_low_4
Description: NF10756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10756_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 5331200 - 5331574
Alignment:
| Q |
1 |
agttcaaacttcataaaactggtgtgattttgacacaaagaagaaaaaagaaatgatgtgttgtgtttctggatatatatgcgtgcatgcttattactta |
100 |
Q |
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| T |
5331200 |
agttcaaacttcataaaactggtgtgattttgacacaaaaaagaaaaaagaaatgatgtgttatgtttctgtatatatatgcgtgcatgcttattactta |
5331299 |
T |
|
| Q |
101 |
gagataaagttatcagagatttacgaggatatatgaaattttcaaaggctcgcatctgggtttgactcttaaatgcagaaggcattttggctagcaattg |
200 |
Q |
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| T |
5331300 |
gagataaagttatcagagatttacgaggatatatgaaattttcaaaggctcgcatctgggtttgactcttaaatgcagaaggcattttggctagcaattg |
5331399 |
T |
|
| Q |
201 |
tagagctgtcaaatcattttcttccttttgatcagcgagttcgccataccctttcaataaaaataaagctgtgcctgcatgcattcaaaatcaacaccta |
300 |
Q |
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| T |
5331400 |
tagagctgtcaaatcattttcttccttttgaacagcgagttcgccataccctttcaataaaaataaagctgtgcctgcatgcgttcaaaatcaacaccta |
5331499 |
T |
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| Q |
301 |
gccaacctcatttttcttcccaaagaaaaagaaataagaaatattaatacagcataacagatataaagcatattg |
375 |
Q |
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| T |
5331500 |
gccaacctcatttttcttcccaaagaaaaagaaataagaaatattaatacagcataacagatataaagcatattg |
5331574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 75 - 279
Target Start/End: Complemental strand, 5315322 - 5315118
Alignment:
| Q |
75 |
atatatgcgtgcatgcttattacttagagataaagttatcagagatttacgaggatatatgaaattttcaaaggctcgcatctgggtttgactcttaaat |
174 |
Q |
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| T |
5315322 |
atatatgcatgcatgcttattacttagaggtaaagttagcagaaaattacgaggatatatgaaatttttgaaggctcccatttgggtttgactcttgaat |
5315223 |
T |
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| Q |
175 |
gcagaaggcattttggctagcaattgtagagctgtcaaatcattttcttccttttgatcagcgagttcgccataccctttcaataaaaataaagctgtgc |
274 |
Q |
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| T |
5315222 |
gcagatggcattttcgttagcaattgcagggttgtcaagtcattttgttcctttagatcagcgagttcattgtatcgtttcaataaccataaagctgtgc |
5315123 |
T |
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| Q |
275 |
ctgca |
279 |
Q |
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||||| |
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| T |
5315122 |
ctgca |
5315118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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