View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10756_low_6 (Length: 325)
Name: NF10756_low_6
Description: NF10756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10756_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 4 - 311
Target Start/End: Complemental strand, 35473989 - 35473679
Alignment:
| Q |
4 |
agaacgcaatgcataaagcttatccttcatcctgcctctcctccttctctcagaaatgagagtcttggacctatcagttttagccctagggttggcatca |
103 |
Q |
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| T |
35473989 |
agaacgcaatgcataaagcttatccttcatcctgcctctcctccttctctcagaaatgagagtcttggacctatcagttttagccctagggttggcatca |
35473890 |
T |
|
| Q |
104 |
tcgatcgtggttgtcgtcgtcgtcgttg---cagaagaaccacctccatcattttctccttctcctttaatcactccatcataacaagagaaggagccaa |
200 |
Q |
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| T |
35473889 |
tcgatcgtggttgtcgttgtcgttgttgttgcagaagaaccacctccatcattttctccttctcctttaatcactccatcataacaagagaaggagccaa |
35473790 |
T |
|
| Q |
201 |
ttgttgtagggcttggattatactcattaacaacattattattaataatattgttgttgtgatcaaataatgggtttggaggaattgaaagaaattggtt |
300 |
Q |
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| T |
35473789 |
ttgttgtagggcttggattatactcattaacaacattattattaataatattgttgttgtgatcaaataatggatttggaggaattgaaagaagttggtt |
35473690 |
T |
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| Q |
301 |
aatattattat |
311 |
Q |
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||||||||||| |
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| T |
35473689 |
aatattattat |
35473679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 20951922 - 20952002
Alignment:
| Q |
4 |
agaacgcaatgcataaagcttatccttcatcctgcctctcctccttctctcagaaatgagagtcttggacctatcagtttt |
84 |
Q |
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|||||||||||| ||||||||||||||||| | || || |||||| |||||||||| | ||||||||| |||||| |||| |
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| T |
20951922 |
agaacgcaatgcgtaaagcttatccttcattcggcttcgcctcctcctctcagaaaccaaagtcttggatctatcattttt |
20952002 |
T |
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