View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10756_low_7 (Length: 315)
Name: NF10756_low_7
Description: NF10756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10756_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 16 - 309
Target Start/End: Complemental strand, 37418331 - 37418037
Alignment:
| Q |
16 |
aatagaatcattgaactaaattttatggggcaaatcttaaggggctaaaattgctcaaaaaagttggaggtcaaattaacacaattaagatatttggtgt |
115 |
Q |
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| T |
37418331 |
aatagaatcattgaactaaattttatggggcaaatctttaggggctaaaattgctcaaaaaagttggaggtcaaattaacacaattaagatatttggtgt |
37418232 |
T |
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| Q |
116 |
ccgaaaatgcaattaagctatttttattttggtgttatccc-ttgatttctaggaaaattgggtcctagtaatcttaagttcggccatgaggtaagcaaa |
214 |
Q |
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| T |
37418231 |
ccggaaatgcaattaagctatttttattttggtattatccccttgatttctaggaaaattaggtcttagtaatcttaagttcggccatgaggtaagcaaa |
37418132 |
T |
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| Q |
215 |
aaattctgtaagattcactctcttaaaaaatatataagatttatctctttccatctaacctcctttacccccaaagtcatttcatttcttctctc |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
37418131 |
aaattctgtaagattcactctcttaaaaaatatataagatttatctctttccatctaatctcctttacccccaaagtcctttcatttcttctctc |
37418037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 305
Target Start/End: Complemental strand, 37426932 - 37426654
Alignment:
| Q |
18 |
tagaatcattgaactaaattttatggggc-aaatcttaaggggctaaaattgctcaaaaaagttggaggtcaaattaacacaattaagatatttggtgtc |
116 |
Q |
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|||| ||||||||||||||| || |||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||| |
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| T |
37426932 |
tagagtcattgaactaaattataaggggggaaatctttaggggctaaaattgctcaaaaaagttgaaggtcaaattaacacaattacgatatttggagtc |
37426833 |
T |
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| Q |
117 |
cgaaaatgcaattaagctatttttattttggtgttat-cccttgatttctaggaaaattgggtcctagtaatcttaagttcggccatgaggtaagcaaaa |
215 |
Q |
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||||||||||||||||||||||||||| | ||||||| ||||||||| |||||||||||||||| ||||||| | ||||||| |||||| ||| | |||| |
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| T |
37426832 |
cgaaaatgcaattaagctatttttattgttgtgttatccccttgattcctaggaaaattgggtcatagtaatttgaagttcgaccatgaagtacgtaaaa |
37426733 |
T |
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| Q |
216 |
aattctgtaagattcactctcttaaaaaatatataagatttatctctttccatctaacctcctttacccccaaagtcatttcatttcttc |
305 |
Q |
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|||| |||||||||| |||||||||| || | ||||||||||||||| | ||||||| ||||||||| |||||||||||| |
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| T |
37426732 |
aattatgtaagattcgctctcttaaa-----------atctctctctttccatctaatcccctttacgcccaaagtcctttcatttcttc |
37426654 |
T |
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