View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10757_high_11 (Length: 221)
Name: NF10757_high_11
Description: NF10757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10757_high_11 |
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| [»] scaffold0229 (1 HSPs) |
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Alignment Details
Target: scaffold0229 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 31 - 181
Target Start/End: Complemental strand, 16928 - 16769
Alignment:
| Q |
31 |
gatggatgagttaataatctgcaactaaattcatatcacattgcatagaagcttttcaaacaaatgcatacctataaagccaatacaaaattaaccaaat |
130 |
Q |
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| T |
16928 |
gatggatgagttaataatctgcaactaaattcatatcacattgcatagaaacttttcaaacaaatgcatacctataaagccaatacaaaattaaccaaat |
16829 |
T |
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| Q |
131 |
attat---------caatgtagaaacaaaaaacctcagagtcctccatccaagtcagttc |
181 |
Q |
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| T |
16828 |
attatcaatattatcaatgtagaaacaaaaaacctcagagtcctccatccaagtcagttc |
16769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 31 - 181
Target Start/End: Original strand, 1401430 - 1401589
Alignment:
| Q |
31 |
gatggatgagttaataatctgcaactaaattcatatcacattgcatagaagcttttcaaacaaatgcatacctataaagccaatacaaaattaacca--- |
127 |
Q |
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| T |
1401430 |
gatggatgagttaataatctgcaactaaattcatatcacattgcatagaaacttttcaaacaaatgcatacctataaagccaatacaaaattaaccaaat |
1401529 |
T |
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| Q |
128 |
------aatattatcaatgtagaaacaaaaaacctcagagtcctccatccaagtcagttc |
181 |
Q |
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| T |
1401530 |
attatcaatattatcaatgtagaaacaaaaaacctcagagtcctccatccaagtcagttc |
1401589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 134
Target Start/End: Original strand, 1376128 - 1376218
Alignment:
| Q |
47 |
atctgcaactaaattca-tatcacattgcatagaag--cttttcaaacaaatgcatacctataaagccaatacaaaattaaccaaatatta |
134 |
Q |
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| T |
1376128 |
atctgcaactaaaatccctatcacattgcatagaataacttttcaaagaagtgcattcctacaaagtcaattcaaatttaaccaaatatta |
1376218 |
T |
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