View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10757_high_2 (Length: 353)
Name: NF10757_high_2
Description: NF10757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10757_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 19 - 343
Target Start/End: Complemental strand, 3551017 - 3550684
Alignment:
| Q |
19 |
tgaatattgtatctggttttcataagttacaatgaaataacatgaattcataaaatgaatcacattttgtagcttccagactacaacaaacccctcttac |
118 |
Q |
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| T |
3551017 |
tgaatattgtatctggttttcataagttacaatgaaataacatgaattcgtaaaatgaatcacattttgtagcttccagactacaacaaacccctcttac |
3550918 |
T |
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| Q |
119 |
aaggaggacaccatagatgacaaaatgcttcaaaccttttggattttgtgtattcatctttttatgtacnnnnnnngaaagaatagatgatgaa------ |
212 |
Q |
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| T |
3550917 |
aaggaggacaccatagatgacaaaatgcttcaaaccttttggattttgtgtattcatctttttatgtacaaaaaaagaaagaatagatgatgaagaataa |
3550818 |
T |
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| Q |
213 |
--gaataattcttctttctcttctctccctcttttgaagctatatagaatttcttcg-ttttttagcttaataatcaatggcgtgatgttggacttctca |
309 |
Q |
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| T |
3550817 |
atgaataattcttctttctcttctctccctcttttgaagctatatagaatttctttgtttttttatcttaataatcaatggcgtgatgttggacttctca |
3550718 |
T |
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| Q |
310 |
aacctcctatattttcaaggtaggacactttctt |
343 |
Q |
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| T |
3550717 |
aacctcctatattttcaaggtaggacgctttctt |
3550684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 61 - 151
Target Start/End: Complemental strand, 3560035 - 3559945
Alignment:
| Q |
61 |
tgaattcataaaatgaatcacattttgtagcttccagactacaacaaacccctcttacaaggaggacaccatagatgacaaaatgcttcaa |
151 |
Q |
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| T |
3560035 |
tgaattcataaaaataatcacattttgtagctccatgactacaacatatccctcttacaaggagggcatcataaatggcaaaatgcttcaa |
3559945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 315
Target Start/End: Original strand, 3568024 - 3568122
Alignment:
| Q |
220 |
tcttctttctcttctctccctcttttgaagctatatagaatttcttcgttttt---tagcttaataatcaatggcgtgatgttggacttctcaaacctc |
315 |
Q |
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| T |
3568024 |
tcttctttctctcctctccctcttttgaaggattatggcatttctcagtgtttatttagcttaataatcaatggtgtgatgttggacttctcatacctc |
3568122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 103
Target Start/End: Complemental strand, 3574062 - 3574007
Alignment:
| Q |
48 |
caatgaaataacatgaattcataaaatgaatcacattttgtagcttccagactaca |
103 |
Q |
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| T |
3574062 |
caatggaataacgtgaattcataaaaagaatcacattttgtagcttcccgactaca |
3574007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 94 - 187
Target Start/End: Original strand, 3558698 - 3558791
Alignment:
| Q |
94 |
ccagactacaacaaacccctcttacaaggaggacaccat-agatgacaaaatgcttcaaaccttttggattttgtgtattcatctttttatgtac |
187 |
Q |
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| T |
3558698 |
ccagactacaacaaaccctt-ttacaaggtggacatcatgaaatgacaaaatgcttcaaacccttttgattatttatattaatctttttatgtac |
3558791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 3567875 - 3567933
Alignment:
| Q |
68 |
ataaaatgaatcacattttgtagcttccagactacaacaaacccctcttacaaggagga |
126 |
Q |
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| T |
3567875 |
ataaaaagaatcacattttgtagcagccagactacaacaaaaccctcttacaagaagga |
3567933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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