View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10757_low_1 (Length: 426)
Name: NF10757_low_1
Description: NF10757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10757_low_1 |
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| [»] scaffold0192 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 17 - 416
Target Start/End: Original strand, 51242238 - 51242661
Alignment:
| Q |
17 |
aggaagaacacgagaagaaattcagattcaaatttgagatcaaattaaattggtggtggaaactggaaatgagaaactagaaattcggattccgatttga |
116 |
Q |
| |
|
|||||||||| ||||| |||||||| |||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
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|
| T |
51242238 |
aggaagaacatgagaataaattcagtttcagatttgagatcgaattaaattggtggtggaaactggaaatgaaaaactagaaattcggattctgatttga |
51242337 |
T |
|
| Q |
117 |
attgcagtgttgttgtgttgcttatgtttgaaattgaaaactagaaatgtgagaatagaaggaaatttatggtgatttatttgtgtgttctttgccattt |
216 |
Q |
| |
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| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
51242338 |
aattcagtgttgttgtgttgcttatgtttgaaattggaaactagaaatgtgagaatagaaggaaatttatggtgatttatttgtgcgttctttgccattt |
51242437 |
T |
|
| Q |
217 |
taatttatttgcgttaactgaaataaatgaaatctcaa--nnnnnnnnnnnaatttcaattcttctgccattttaatttatgatgatttatttgtgt--- |
311 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
51242438 |
taatttatttgtgttaactgaaataaaggaaatctcaatttatttatttttaatttcaattcttctgccattttaatttatggtgatttatttgtgtttc |
51242537 |
T |
|
| Q |
312 |
-------------------aagagaagataaggaagttaacttatttttgtgttactgtaatggaggaagaaatgaatgagggacctaaattctaccttt |
392 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51242538 |
tgtgtgttgtgggtgggagaagagaagataaggaagttaacttgtttttgtgttattgtaatggaggaagaaatgaatgagggacctaaattctaccttt |
51242637 |
T |
|
| Q |
393 |
tctttaaagaaaattccacctttg |
416 |
Q |
| |
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|||||||||||||||| ||||||| |
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| T |
51242638 |
tctttaaagaaaattctacctttg |
51242661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 337 - 392
Target Start/End: Original strand, 44978326 - 44978381
Alignment:
| Q |
337 |
tttttgtgttactgtaatggaggaagaaatgaatgagggacctaaattctaccttt |
392 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
44978326 |
tttttgtgttattgtaatggaggaagaaatgaatgagggacctaaattccaccttt |
44978381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 44977871 - 44977935
Alignment:
| Q |
17 |
aggaagaacacgagaagaaattcagattcaaatttgagatcaaattaaattggtggtggaaactg |
81 |
Q |
| |
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||||||| || |||||| |||||||||||| |||||| || ||| |||||||||||||||||| |
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| T |
44977871 |
aggaagatcatgagaaggaattcagattcagatttgaattcggattcaattggtggtggaaactg |
44977935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 416
Target Start/End: Complemental strand, 12602039 - 12601610
Alignment:
| Q |
17 |
aggaagaacacgagaagaaattcagattcaaatttgagatcaaattaaattggtggtggaaactggaaatgagaaactagaaattcggattccgatttga |
116 |
Q |
| |
|
|||||||||| ||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
12602039 |
aggaagaacatgagaagaaattcagaatcagatttgagatcgaattaaattggtggtggaaactggaaatgagaaactagaaattcgaattctgatttga |
12601940 |
T |
|
| Q |
117 |
attgcagtgttgttgtgttgcttatgtttgaaattgaaaactagaaatgtgagaatagaaggaaatttatggtgatttatttgtgtgttctt-tgccatt |
215 |
Q |
| |
|
| | ||||||||||||||||| |||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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|
| T |
12601939 |
aattcagtgttgttgtgttgcatatgtttgaaattggaaaccagaaatgggagaatagaaggaaatttatggtgatttatttgtgtgtacttctgccatt |
12601840 |
T |
|
| Q |
216 |
ttaatttatttgcgttaactgaaataaatgaaatctcaa-------nnnnnnnnnnnaatttcaattcttctgccattttaatttatgatgatttatttg |
308 |
Q |
| |
|
|||||||||| | ||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
12601839 |
ttaatttattcgtgtttactgaaataaaggaaatctcaatctttttttttttttttaaatttcaattcttctgccattttaatttatggtgatttatttg |
12601740 |
T |
|
| Q |
309 |
tgt----------------------aagagaagataaggaagttaacttatttttgtgttactgtaatggaggaagaaatgaatgagggacctaaattct |
386 |
Q |
| |
|
||| ||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| | |
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|
| T |
12601739 |
tgtttctgtgtgttgtgggtgggagaagagaagataagtaagttaacttgtttttgtgttattgtaatggaggaagaaatgaatgagggacctaaatttt |
12601640 |
T |
|
| Q |
387 |
accttttctttaaagaaaattccacctttg |
416 |
Q |
| |
|
||||||| ||||| |||||||| ||||||| |
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|
| T |
12601639 |
accttttttttaaggaaaattctacctttg |
12601610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 393
Target Start/End: Complemental strand, 8892539 - 8892146
Alignment:
| Q |
17 |
aggaagaacacgagaagaaattcagattcaaatttgagatcaaattaaattggtggtggaaactggaaatgagaaactagaaattcggattccgatttga |
116 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||| | ||| ||||||| |
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|
| T |
8892539 |
aggaagaacatgagaagaaattcagatt------tgagatcgaattaaattggtggtggaaactgaaaatgagaaactagaaatttgaattatgatttga |
8892446 |
T |
|
| Q |
117 |
attgcagtgttgttgtgttgcttatgtttgaaattgaaaactagaaatgtgagaatagaaggaaatttatggtgatttatttgtgtgttctt-tgccatt |
215 |
Q |
| |
|
| | ||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
8892445 |
aattcagtgttgttgtgttgcatatgtttgaaattggaaactagaaatgggagaatagaaggaaatttatggtgatttatttgtgtgttcttctgccatt |
8892346 |
T |
|
| Q |
216 |
ttaatttatttgcgttaactgaaataaatgaaatctcaannnnnnnnnnnaatttcaattcttctgccattttaatttatgatgatttatttgtgt---- |
311 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||| || |
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|
| T |
8892345 |
ttaatttatttgtgttaactgaaataaaggaaatctcaatcctttttttttatttcaattcttctgccattttaatttatggtgatttatttgcgtttct |
8892246 |
T |
|
| Q |
312 |
------------------aagagaagataaggaagttaacttatttttgtgttactgtaatggaggaagaaatgaatgagggacctaaattctacctttt |
393 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
8892245 |
gtgtgttgtgggtgggagaagagaagataaggaagttaacttgtttttgtgttattgtaatggaggaagaaatgaatgagggacctaacttctacctttt |
8892146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 17 - 177
Target Start/End: Complemental strand, 13364462 - 13364302
Alignment:
| Q |
17 |
aggaagaacacgagaagaaattcagattcaaatttgagatcaaattaaattggtggtggaaactggaaatgagaaactagaaattcggattccgatttga |
116 |
Q |
| |
|
||||| |||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| | |
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|
| T |
13364462 |
aggaaaaacatgagaagaaattcagattcagatttgagatcgaattaaattggtggtggaaactggaaatgagaaactagaaattcagattctgatttaa |
13364363 |
T |
|
| Q |
117 |
attgcagtgttgttgtgttgcttatgtttgaaattgaaaactagaaatgtgagaatagaag |
177 |
Q |
| |
|
| | ||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
13364362 |
aattcagtgttgttgtgttgcatatgtttgaaattggaaactagaaatgggagaatagaag |
13364302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 337 - 392
Target Start/End: Original strand, 10053402 - 10053457
Alignment:
| Q |
337 |
tttttgtgttactgtaatggaggaagaaatgaatgagggacctaaattctaccttt |
392 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10053402 |
tttttgtgttattgtcatggaggaagaaatgaatgagggacctaaattctaccttt |
10053457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 17 - 177
Target Start/End: Complemental strand, 13824108 - 13823948
Alignment:
| Q |
17 |
aggaagaacacgagaagaaattcagattcaaatttgagatcaaattaaattggtggtggaaactggaaatgagaaactagaaattcggattccgatttga |
116 |
Q |
| |
|
||||| |||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| | |
|
|
| T |
13824108 |
aggaaaaacatgagaagaaattcagattcagatttgagatcgaattaaattggtggtggaaactggaaatgagaaactagaaattcagattctgatttaa |
13824009 |
T |
|
| Q |
117 |
attgcagtgttgttgtgttgcttatgtttgaaattgaaaactagaaatgtgagaatagaag |
177 |
Q |
| |
|
| | ||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
13824008 |
aattcagtgttgttgtgttgcatatgtttgaaattggaaactagaaatgggagaatagaag |
13823948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 17 - 177
Target Start/End: Original strand, 24042328 - 24042488
Alignment:
| Q |
17 |
aggaagaacacgagaagaaattcagattcaaatttgagatcaaattaaattggtggtggaaactggaaatgagaaactagaaattcggattccgatttga |
116 |
Q |
| |
|
||||| |||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||| | |
|
|
| T |
24042328 |
aggaaaaacatgagaagaaattcagattcagatttgagatcgaattaaattggtggtggaaactagaaatgagaaactagaaattctgattctgatttaa |
24042427 |
T |
|
| Q |
117 |
attgcagtgttgttgtgttgcttatgtttgaaattgaaaactagaaatgtgagaatagaag |
177 |
Q |
| |
|
| | ||||||||||||| ||| |||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
24042428 |
aattcagtgttgttgtggtgcatatgtttgaaattggaaactagaaatgggagaatagaag |
24042488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0192 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: scaffold0192
Description:
Target: scaffold0192; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 36 - 177
Target Start/End: Complemental strand, 13854 - 13713
Alignment:
| Q |
36 |
attcagattcaaatttgagatcaaattaaattggtggtggaaactggaaatgagaaactagaaattcggattccgatttgaattgcagtgttgttgtgtt |
135 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||| | ||||||||||||||| |
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|
| T |
13854 |
attcagattcagatttgagatcgaattaaattggtggtggaaactgaaaatgagaaactagaaattcagattctgatttgaaattcagtgttgttgtgtt |
13755 |
T |
|
| Q |
136 |
gcttatgtttgaaattgaaaactagaaatgtgagaatagaag |
177 |
Q |
| |
|
|| |||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
13754 |
gcatatgtttgaaattggaaactagaaatgggagaatagaag |
13713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 337 - 392
Target Start/End: Complemental strand, 29686860 - 29686805
Alignment:
| Q |
337 |
tttttgtgttactgtaatggaggaagaaatgaatgagggacctaaattctaccttt |
392 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
29686860 |
tttttgtgttattgtaatggaggaagaaatgaatgagagacctaaattctaccttt |
29686805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 180
Target Start/End: Complemental strand, 29687335 - 29687177
Alignment:
| Q |
17 |
aggaagaacacgagaagaaattcagattcaaatttgagatcaaattaaattggtggtggaaactggaaa-tgagaaactagaaattcggattccgatttg |
115 |
Q |
| |
|
||||||| || |||||| |||||||||||| |||||| || || |||||||||||||||||||||| || |||| ||||||||| ||||| |
|
|
| T |
29687335 |
aggaagatcatgagaaggaattcagattcagatttgaattcgggttcaattggtggtggaaactggaaactgggaaa------attcggattttgatttt |
29687242 |
T |
|
| Q |
116 |
aattgcagtgttgttgtgttgcttatgtttgaaattgaaaactagaaatgtgagaatagaaggaa |
180 |
Q |
| |
|
| ||||||||||||||||| ||| ||| ||||||||||| |||||| ||||||| |||||| |
|
|
| T |
29687241 |
tgattcagtgttgttgtgttgcatatatttagaattgaaaactggaaatgggagaataaaaggaa |
29687177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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