View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10757_low_11 (Length: 235)
Name: NF10757_low_11
Description: NF10757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10757_low_11 |
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| [»] scaffold0099 (1 HSPs) |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 16 - 219
Target Start/End: Original strand, 24895179 - 24895382
Alignment:
| Q |
16 |
caaaggagggaggagcttggaaagttccctgttaggacaaactgaaactaaaatagttttttaagcaacagtgaaagtgattgctctaatctgaattacg |
115 |
Q |
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||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
24895179 |
caaagaagggaggagcttggaaagttccctgttaagacaaactgaaactaaaatagttttttaagcaacggtgaaagtgattgctctaatctgaattacg |
24895278 |
T |
|
| Q |
116 |
aagcatggcattactcatgcatagtcttccattgacttttctccagtcaaacatctagttcttttgttatgtgactaatttattcagagtaatttgttca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
24895279 |
aagcatggcattactcatgcatagtcttccattgacttttctccagtcaagcatctagtttttttgttatgtgactaatttattcagagtaatttgttca |
24895378 |
T |
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| Q |
216 |
actg |
219 |
Q |
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|||| |
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| T |
24895379 |
actg |
24895382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 16 - 219
Target Start/End: Original strand, 24985149 - 24985351
Alignment:
| Q |
16 |
caaaggagggaggagcttggaaagttccctgttaggacaaactgaaactaaaatagttttttaagcaacagtgaaagtgattgctctaatctgaattacg |
115 |
Q |
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||||| ||||||| |||||||||||||| ||||| ||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24985149 |
caaagaagggaggggcttggaaagttcc-tgttaagactaactaaaaccaaaatagttttttaagcaacagtgaaagtgattgctctaatctgaattacg |
24985247 |
T |
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| Q |
116 |
aagcatggcattactcatgcatagtcttccattgacttttctccagtcaaacatctagttcttttgttatgtgactaatttattcagagtaatttgttca |
215 |
Q |
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|||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | || |||||||| |
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| T |
24985248 |
aagcatggcattactcattcataatcttcaattgacttttctccagtcaaacatctagtttttttgttatgtgactaatttattcaaaatactttgttca |
24985347 |
T |
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| Q |
216 |
actg |
219 |
Q |
| |
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|||| |
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| T |
24985348 |
actg |
24985351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 16 - 219
Target Start/End: Original strand, 24907634 - 24907824
Alignment:
| Q |
16 |
caaaggagggaggagcttggaaagttccctgttaggacaaactgaaactaaaatagttttttaagcaacagtgaaagtgattgctctaatctgaattacg |
115 |
Q |
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||||| |||| ||||||||||||||||||||||| || |||| |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
24907634 |
caaagaaggggggagcttggaaagttccctgttaagagtaactaaaaccaaaatagttttttaagcaacagtgaaagtgattgctctaa----------- |
24907722 |
T |
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| Q |
116 |
aagcatggcattactcatgcatagtcttccattgacttttctccagtcaaacatctagttcttttgttatgtgactaatttattcagagtaatttgttca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||| |
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| T |
24907723 |
--gcatggcattactcatgcatagtcttccattgacttttctccagtcaaacatctagtttttttgttatgtgactaatttattcaaagtactttgttca |
24907820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0099 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0099
Description:
Target: scaffold0099; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 34 - 201
Target Start/End: Original strand, 21170 - 21348
Alignment:
| Q |
34 |
ggaaagttccctgttaggac-aaactgaaactaaaat--agttttttaagc--aacagtgaaagtgattgctctaatc-tgaattacgaagcatggcatt |
127 |
Q |
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|||||||||||||||| ||| ||||| |||| ||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
21170 |
ggaaagttccctgttaagactaaactaaaaccaaaattaagttttttaagctaaacagtgaaagtgattgctctaatcttgaattacgaagcatggcatt |
21269 |
T |
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| Q |
128 |
actca-tgca-tagtcttccattgac-ttttctccagtcaaaca-tctagttcttttg-ttatgtgactaatttattca |
201 |
Q |
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||||| | || || ||||| |||||| ||||||||||||||||| ||||||| ||||| |||||||||||||||||||| |
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| T |
21270 |
actcagttcattaatcttcaattgactttttctccagtcaaacattctagtttttttgtttatgtgactaatttattca |
21348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 136594 - 136651
Alignment:
| Q |
116 |
aagcatggcattactcatgcatagtcttccattgacttttctccagtcaaacatctag |
173 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
136594 |
aagcatggcattactcatgcataatcttccattgacttttctctagtcaaacatctag |
136651 |
T |
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