View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10757_low_12 (Length: 230)

Name: NF10757_low_12
Description: NF10757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10757_low_12
NF10757_low_12
[»] chr5 (1 HSPs)
chr5 (1-230)||(41345612-41345841)
[»] chr7 (1 HSPs)
chr7 (3-47)||(9483384-9483428)
[»] chr8 (2 HSPs)
chr8 (17-60)||(15140368-15140411)
chr8 (9-61)||(30918778-30918830)
[»] chr4 (1 HSPs)
chr4 (2-44)||(35212745-35212787)
[»] chr3 (1 HSPs)
chr3 (3-61)||(7563199-7563257)
[»] chr6 (2 HSPs)
chr6 (8-49)||(6916737-6916778)
chr6 (11-43)||(33501985-33502017)
[»] chr2 (2 HSPs)
chr2 (11-63)||(9994743-9994795)
chr2 (1-61)||(33498626-33498686)
[»] chr1 (1 HSPs)
chr1 (7-43)||(46873779-46873815)


Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 41345841 - 41345612
Alignment:
Q  1 tcgacaccaataatagtttgagaaaattgactaattgaatgtaaccacacgagtcggtgttgtatcaaacacaaacacgtgttggacaccaaatacacct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| | |||||||||||    
T  41345841 tcgacaccaataatagtttgagaaaattgactaattgaatgtaaccacacgagtcagtgttgtatcaaacactaacacgtgttggataacaaatacacct 41345742  T
Q  101 acaatataaagtgtctatgctatatagttcaatttcaccccttaaaattaaaactaccaagcaaaactttttcaagcatatacctggaactgtctttgac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41345741 acaatataaagtgtctatgctatatagttcaatttcaccccttaaaattaaaactaccaagcaaaactttttcaagcatatacctggaactgtctttgac 41345642  T
Q  201 ttcaatctcttgtctttggcattaagatca 230  Q
    ||||||||||||||||||||||||||||||    
T  41345641 ttcaatctcttgtctttggcattaagatca 41345612  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 9483384 - 9483428
Alignment:
Q  3 gacaccaataatagtttgagaaaattgactaattgaatgtaacca 47  Q
    ||||||||||||| ||||||||||| || ||||||||||||||||    
T  9483384 gacaccaataataatttgagaaaatagaataattgaatgtaacca 9483428  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 15140411 - 15140368
Alignment:
Q  17 tttgagaaaattgactaattgaatgtaaccacacgagtcggtgt 60  Q
    ||||||||| |||| |||||||||||||||||||| ||||||||    
T  15140411 tttgagaaatttgaataattgaatgtaaccacacgtgtcggtgt 15140368  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 30918830 - 30918778
Alignment:
Q  9 aataatagtttgagaaaattgactaattgaatgtaaccacacgagtcggtgtt 61  Q
    ||||||| ||| ||||| |||| |||||||||||||||||| | |||||||||    
T  30918830 aataataattttagaaagttgaataattgaatgtaaccacatgtgtcggtgtt 30918778  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 35212787 - 35212745
Alignment:
Q  2 cgacaccaataatagtttgagaaaattgactaattgaatgtaa 44  Q
    |||||||||||||| |||||||||||| | |||||||||||||    
T  35212787 cgacaccaataataatttgagaaaattaaataattgaatgtaa 35212745  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 7563257 - 7563199
Alignment:
Q  3 gacaccaataatagtttgagaaaattgactaattgaatgtaaccacacgagtcggtgtt 61  Q
    ||||||||||||| |||||||| || || |||||||||||| | ||||| |||||||||    
T  7563257 gacaccaataataatttgagaatatggaataattgaatgtatctacacgtgtcggtgtt 7563199  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 6916737 - 6916778
Alignment:
Q  8 caataatagtttgagaaaattgactaattgaatgtaaccaca 49  Q
    |||||| | |||||||||||||| ||||||||||||||||||    
T  6916737 caataacaatttgagaaaattgaataattgaatgtaaccaca 6916778  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 33502017 - 33501985
Alignment:
Q  11 taatagtttgagaaaattgactaattgaatgta 43  Q
    |||||||||||||||||||| ||||||||||||    
T  33502017 taatagtttgagaaaattgaataattgaatgta 33501985  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 9994743 - 9994795
Alignment:
Q  11 taatagtttgagaaaattgactaattgaatgtaaccacacgagtcggtgttgt 63  Q
    |||||||||||||||||| | || |||||||| |||||| | |||||||||||    
T  9994743 taatagtttgagaaaattaaatagttgaatgtgaccacatgcgtcggtgttgt 9994795  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 33498626 - 33498686
Alignment:
Q  1 tcgacaccaataatagtttgagaaaattgactaattgaatgtaaccacacgagtcggtgtt 61  Q
    ||||||| | ||||| ||||||||||| || |||||||||||||||  ||| |||||||||    
T  33498626 tcgacacaagtaataatttgagaaaatggaataattgaatgtaacctgacgtgtcggtgtt 33498686  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 46873779 - 46873815
Alignment:
Q  7 ccaataatagtttgagaaaattgactaattgaatgta 43  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  46873779 ccaataatagtttgataaaatggactaattgaatgta 46873815  T

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