View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10757_low_14 (Length: 204)
Name: NF10757_low_14
Description: NF10757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10757_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 14 - 186
Target Start/End: Original strand, 27838549 - 27838721
Alignment:
| Q |
14 |
caaaggcttaagagtggcaaatgcatatatatggactggacaaaatttagtttgaatcgtaacggtacatcaaaacaatccttttagtcatttataataa |
113 |
Q |
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| T |
27838549 |
caaaggcttaagagtggcaaatgcatatatatggactggacaaaatttagtttggatcgtaatggtacatcaaaacaatcattttagtcatttataataa |
27838648 |
T |
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| Q |
114 |
attaaaaccgtaattnnnnnnntaaaccgacatagttcaatctcgtgaaaggagttggacaacgtgacaaatc |
186 |
Q |
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|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27838649 |
attaaaactgtaattaaaaaaataaaccgacatagttcaatctcgtgaaaggagttggacaacgtgacaaatc |
27838721 |
T |
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