View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10757_low_5 (Length: 269)
Name: NF10757_low_5
Description: NF10757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10757_low_5 |
 | |
|
| [»] scaffold2086 (1 HSPs) |
| | |
|
| [»] scaffold1996 (2 HSPs) |
| | |
|
| [»] scaffold0891 (1 HSPs) |
| | |
|
| [»] scaffold1335 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 35754474 - 35754348
Alignment:
| Q |
1 |
ttcctactatttgttggcccttctttgctgagcaacaaacaaattgcaagtatttatgcgacacttggaaagtaggaatggaaattaacaatgatgtaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35754474 |
ttcctactatttgttggcccttctttgctgagcaacaaacaaattgcaagtatttatgcgacacttggaaagtaggaatggaaattaacaatgatgtaaa |
35754375 |
T |
|
| Q |
101 |
aagggaggagataacagaacttgtact |
127 |
Q |
| |
|
|||||| |||||||||||||||||||| |
|
|
| T |
35754374 |
aagggaagagataacagaacttgtact |
35754348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 124
Target Start/End: Complemental strand, 35866047 - 35865926
Alignment:
| Q |
3 |
cctactatttgttggcccttctttgctgagcaacaaacaaattgcaagtatttatgcgacacttggaaagtaggaatggaaattaacaatgatgtaaaaa |
102 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| | |||||||||| ||||||||||| |||| |||||||||||| ||||||| |||| |
|
|
| T |
35866047 |
cctactatttgttggcctttctttgctgagcaacaaacaaattgtaggtatttatgcaacacttggaaaatagggatggaaattaactatgatgtgaaaa |
35865948 |
T |
|
| Q |
103 |
gggaggagataacagaacttgt |
124 |
Q |
| |
|
| || ||||||| ||||||||| |
|
|
| T |
35865947 |
gagaagagataagagaacttgt |
35865926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 124
Target Start/End: Complemental strand, 35774595 - 35774474
Alignment:
| Q |
3 |
cctactatttgttggcccttctttgctgagcaacaaacaaattgcaagtatttatgcgacacttggaaagtaggaatggaaattaacaatgatgtaaaaa |
102 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| |||||||||| | |||||||| |||| |||||||||||| ||||||| |||| |
|
|
| T |
35774595 |
cctactatttgttggcctttctttgctgagcaacaaacaaattgttggtatttatgcaagtcttggaaaatagggatggaaattaaccatgatgttaaaa |
35774496 |
T |
|
| Q |
103 |
gggaggagataacagaacttgt |
124 |
Q |
| |
|
|||| || |||||||||||||| |
|
|
| T |
35774495 |
gggatgatataacagaacttgt |
35774474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 124
Target Start/End: Complemental strand, 35848376 - 35848255
Alignment:
| Q |
3 |
cctactatttgttggcccttctttgctgagcaacaaacaaattgcaagtatttatgcgacacttggaaagtaggaatggaaattaacaatgatgtaaaaa |
102 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||||||| | |||||||||| ||||||||||| | || |||||||||||| ||||||| |||| |
|
|
| T |
35848376 |
cctactatttgttggcctttctttgttgagcaacaaacaaattgtaggtatttatgcaacacttggaaaattgggatggaaattaactatgatgtgaaaa |
35848277 |
T |
|
| Q |
103 |
gggaggagataacagaacttgt |
124 |
Q |
| |
|
| || ||||||| |||||||| |
|
|
| T |
35848276 |
gtgaagagataattgaacttgt |
35848255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 201 - 259
Target Start/End: Complemental strand, 35754274 - 35754216
Alignment:
| Q |
201 |
gctaatgattttggaggatcatcatacactaatttccataagttaattacacaggttct |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
35754274 |
gctaatgattttggaggatcatcatacactaatttccataagttaattacagaggttct |
35754216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 247
Target Start/End: Complemental strand, 35848171 - 35848132
Alignment:
| Q |
208 |
attttggaggatcatcatacactaatttccataagttaat |
247 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
35848171 |
atttgggaggatcatcatacaataatttccataagttaat |
35848132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 35735623 - 35735590
Alignment:
| Q |
13 |
gttggcccttctttgctgagcaacaaacaaattg |
46 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |
|
|
| T |
35735623 |
gttggcctttctttgctgagcaacaaacaaattg |
35735590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2086 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold2086
Description:
Target: scaffold2086; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 3 - 124
Target Start/End: Original strand, 359 - 480
Alignment:
| Q |
3 |
cctactatttgttggcccttctttgctgagcaacaaacaaattgcaagtatttatgcgacacttggaaagtaggaatggaaattaacaatgatgtaaaaa |
102 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| | |||||||||| ||||||||||| |||| |||||||||||| ||||||| |||| |
|
|
| T |
359 |
cctactatttgttggcctttctttgctgagcaacaaacaaattgtaggtatttatgcaacacttggaaaatagggatggaaattaaccatgatgttaaaa |
458 |
T |
|
| Q |
103 |
gggaggagataacagaacttgt |
124 |
Q |
| |
|
|||| || |||| |||| |||| |
|
|
| T |
459 |
gggatgatataaaagaaattgt |
480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1996 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: scaffold1996
Description:
Target: scaffold1996; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 3 - 124
Target Start/End: Original strand, 359 - 480
Alignment:
| Q |
3 |
cctactatttgttggcccttctttgctgagcaacaaacaaattgcaagtatttatgcgacacttggaaagtaggaatggaaattaacaatgatgtaaaaa |
102 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| | |||||||||| ||||||||||| |||| |||||||||||| ||||||| |||| |
|
|
| T |
359 |
cctactatttgttggcctttctttgctgagcaacaaacaaattgtaggtatttatgcaacacttggaaaatagggatggaaattaaccatgatgttaaaa |
458 |
T |
|
| Q |
103 |
gggaggagataacagaacttgt |
124 |
Q |
| |
|
|||| || |||| |||| |||| |
|
|
| T |
459 |
gggatgatataaaagaaattgt |
480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1996; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 34 - 124
Target Start/End: Original strand, 1083 - 1173
Alignment:
| Q |
34 |
aacaaacaaattgcaagtatttatgcgacacttggaaagtaggaatggaaattaacaatgatgtaaaaagggaggagataacagaacttgt |
124 |
Q |
| |
|
||||||||||||| | |||||||||| ||||||||||| | || |||||||||||| ||||||| |||||||| |||||||| |||||||| |
|
|
| T |
1083 |
aacaaacaaattgtaggtatttatgcaacacttggaaaattgggatggaaattaaccatgatgtgaaaagggaagagataaccgaacttgt |
1173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0891 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 125
Target Start/End: Original strand, 3496 - 3618
Alignment:
| Q |
3 |
cctactatttgttggcccttctttgctgagcaacaaacaaattgcaagtatttatgcgacacttggaaagtaggaatggaaattaacaatgatgtaaaaa |
102 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||| | |||||||||| | |||||||| |||| |||||||||||| ||||||| |||| |
|
|
| T |
3496 |
cctactatttgttggcctttctttgctgaacaacaaacaaattgtaggtatttatgcaagtcttggaaaatagggatggaaattaaccatgatgttaaaa |
3595 |
T |
|
| Q |
103 |
gggaggagataacagaacttgta |
125 |
Q |
| |
|
|||| || ||||| ||| ||||| |
|
|
| T |
3596 |
gggatgatataactgaaattgta |
3618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1335 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold1335
Description:
Target: scaffold1335; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 247
Target Start/End: Original strand, 92 - 131
Alignment:
| Q |
208 |
attttggaggatcatcatacactaatttccataagttaat |
247 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
92 |
atttgggaggatcatcatacaataatttccataagttaat |
131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University