View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10757_low_6 (Length: 253)

Name: NF10757_low_6
Description: NF10757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10757_low_6
NF10757_low_6
[»] chr1 (2 HSPs)
chr1 (91-253)||(17681590-17681752)
chr1 (17-60)||(17681427-17681470)


Alignment Details
Target: chr1 (Bit Score: 119; Significance: 7e-61; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 91 - 253
Target Start/End: Original strand, 17681590 - 17681752
Alignment:
Q  91 ggggtaacgaatctgtgaagcaattactagcaggttcgatcgagctggtggacaaagtacgcggtttgactagactgagtaaagctatgtgtggctaaga 190  Q
    |||||||||||| |||||||||||||| |||| |||||||  |||||  |||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  17681590 ggggtaacgaatatgtgaagcaattacaagcatgttcgattcagctgtcggacaaagtacgcggtttgattagactgagtaaggctatgtgtggctaaga 17681689  T
Q  191 atgttttatccgttgaagcttaatccgatgataaaagaagaagtgttaggcagtaggagaatt 253  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  17681690 atgttttgtccgttgcagcttaatccgatgataaaagaagaagtgttaggcagtaggagaatt 17681752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 17681427 - 17681470
Alignment:
Q  17 agagtaagaaaaagacatgttttgtctgttgcgcagcttaaccc 60  Q
    |||||||||||||||||||||||||||| |||| ||||||||||    
T  17681427 agagtaagaaaaagacatgttttgtctgctgcgaagcttaaccc 17681470  T

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