View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10757_low_8 (Length: 249)
Name: NF10757_low_8
Description: NF10757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10757_low_8 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 67 - 249
Target Start/End: Complemental strand, 32727033 - 32726851
Alignment:
| Q |
67 |
gtttctttactactaacacatacttcaacctgtacaaacaagaactcattaattcaatatcctgcattcatttggctatatgtgttaaaaggaccataca |
166 |
Q |
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| T |
32727033 |
gtttctttactactaacacatacttcaacccgtacaaacaagaactcattaattcaatatcctatattcatttggctatatgtgttaaaaggaccatata |
32726934 |
T |
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| Q |
167 |
ttatatttacttatttttctttnnnnnnnttatctgatgaggacttactcgcctatctgttgtcttcctcttcctcatccaac |
249 |
Q |
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| T |
32726933 |
ttatatttacttatttttctttaaaaaaattatctgatgaggacttactcgcctatctgttgtcttcctcttcctcatccaac |
32726851 |
T |
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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 44
Target Start/End: Complemental strand, 32727090 - 32727056
Alignment:
| Q |
10 |
gatgaaagtgtatatctacattatagtcgtctctg |
44 |
Q |
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| T |
32727090 |
gatgaaagtgtatatctacattatagtcgtctctg |
32727056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 84 - 183
Target Start/End: Original strand, 654733 - 654833
Alignment:
| Q |
84 |
acatacttcaacctgtacaaacaagaactc--attaattcaatatcctgcattcatttggctatatgtgttaaaaggaccatacattatatttacttatt |
181 |
Q |
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| T |
654733 |
acatatttcaagccgtacaaacaaggactctaattaattcaatattctatattcatttggctgtatgtgataaaaggaccatgcatt-tatttatttatt |
654831 |
T |
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| Q |
182 |
tt |
183 |
Q |
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|| |
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| T |
654832 |
tt |
654833 |
T |
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