View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10757_low_9 (Length: 238)
Name: NF10757_low_9
Description: NF10757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10757_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 15 - 223
Target Start/End: Original strand, 32679627 - 32679835
Alignment:
| Q |
15 |
caaaggtcacagttatgaagcgttgcgaaatccaagtgaaacacaagttgtggatgaacaacaagaccaaggagatggatatgatagttactatggttat |
114 |
Q |
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| T |
32679627 |
caaaggtcacagttatgaagcgttgcgaaatccaagtgaaacacaagttgtggatgaacaacaagaccaaggagatggatatgatagttactatggttat |
32679726 |
T |
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| Q |
115 |
ggagatgatgatggcaagtaccctgacttgactcacactctttttgattttgaaggattggattttgatggctcagtgattgataaggtgaagatttgca |
214 |
Q |
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| T |
32679727 |
ggagatgatgatggcaagtaccctgacttgactcacactctttttgattttgaaggattggattttgatggctcagtgattgataaggtgaagatttgca |
32679826 |
T |
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| Q |
215 |
aggaagaag |
223 |
Q |
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||||||||| |
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| T |
32679827 |
aggaagaag |
32679835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 27 - 223
Target Start/End: Original strand, 32695714 - 32695925
Alignment:
| Q |
27 |
ttatgaagcgttgcgaaatccaagtgaaacacaagttgtggatgaacaacaagaccaaggagatggatatgatagttactatggttatgg---------- |
116 |
Q |
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| T |
32695714 |
ttatgaagcattgcaaaatccaagtgaaacacaagttgtagatgaacaacaagaccaagaagatggatatgatagttactatggttatggttatggagat |
32695813 |
T |
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| Q |
117 |
-----agatgatgatggcaagtaccctgacttgactcacactctttttgattttgaaggattggattttgatggctcagtgattgataaggtgaagattt |
211 |
Q |
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| T |
32695814 |
gatgatgatgatgatgacaagtaccctgatttgactcacacactttttgattctgaaggattggattttgctgggtcagtgattgataaggtgaagaatt |
32695913 |
T |
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| Q |
212 |
gcaaggaagaag |
223 |
Q |
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| T |
32695914 |
gtaaggaagaag |
32695925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 32686659 - 32686713
Alignment:
| Q |
21 |
tcacagttatgaagcgttgcgaaatccaagtgaaacacaagttgtggatgaacaa |
75 |
Q |
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| T |
32686659 |
tcacacttatgaggcgttgcgaaatccaagtgaaacacaagttgtggatgaacaa |
32686713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 223
Target Start/End: Original strand, 32686771 - 32686825
Alignment:
| Q |
169 |
ggattggattttgatggctcagtgattgataaggtgaagatttgcaaggaagaag |
223 |
Q |
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| T |
32686771 |
ggattggattttgacggatcggtgattgataaggtgaagaattgtaaggaagaag |
32686825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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