View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10758_low_13 (Length: 239)
Name: NF10758_low_13
Description: NF10758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10758_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 8036518 - 8036299
Alignment:
| Q |
1 |
ctgaagcgacagcggcaggaaaataggattagtgagttgcctgactgcatattgctccacatactgaggtttcttgaagcacaagatgctgttcagactt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8036518 |
ctgaagcgacagcggcaggaaaataggattagtgagttgcctgactgcatattgctccacatactgaggtttcttgaagcacaagatgctgttcagactt |
8036419 |
T |
|
| Q |
101 |
gtatcttgtctaaacggtggaaggatctttgcaaacgcgtcactactctcacatatactcggtctggagatacatcttcaaatgatagttttgagcaatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
8036418 |
gtatcttgtctaaacggtggaaggatctttgcaaacgcgtcactactctcacatatactcggtctggagttacatcttcaaatg---cttttgagcaatt |
8036322 |
T |
|
| Q |
201 |
tatgtcttgggttctgtccaata |
223 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
8036321 |
tatgtcttgggttctgtccaata |
8036299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 8041935 - 8041716
Alignment:
| Q |
1 |
ctgaagcgacagcggcaggaaaataggattagtgagttgcctgactgcatattgctccacatactgaggtttcttgaagcacaagatgctgttcagactt |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| | || | ||||||||||||| ||||||||||| ||||| |
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| T |
8041935 |
ctgaagcgacagcggcaggaagataggattagtgatttgcctgactgcatattgctccacacattgggttttcttgaagcacgagatgctgttcggactt |
8041836 |
T |
|
| Q |
101 |
gtatcttgtctaaacggtggaaggatctttgcaaacgcgtcactactctcacatatactcggtctggagatacatcttcaaatgatagttttgagcaatt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||| |||| || | | || |||| |
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| T |
8041835 |
gtatcttgtctaaacggtggaaggatctttgcaaacgcgtcactactctcacatatactccgtctccacttacatcttcgtatgaaagatctaagaaatt |
8041736 |
T |
|
| Q |
201 |
tatgtcttgggttctgtcca |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
8041735 |
tatgtcttgggttctgtcca |
8041716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 21 - 218
Target Start/End: Complemental strand, 9139102 - 9138905
Alignment:
| Q |
21 |
aaataggattagtgagttgcctgactgcatattgctccacatactgaggtttcttgaagcacaagatgctgttcagacttgtatcttgtctaaacggtgg |
120 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||| |||||||||||||||||| |
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| T |
9139102 |
aaataggatttgtgagttgcctgactgcatattgctccacatattgagttttcttgaagcacaagatgctgttcggacttgcatcttgtctaaacggtgg |
9139003 |
T |
|
| Q |
121 |
aaggatctttgcaaacgcgtcactactctcacatatactcggtctggagatacatcttcaaatgatagttttgagcaatttatgtcttgggttctgtc |
218 |
Q |
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|
||||||||||||||| || ||||||||||||||||||||| | | | ||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
9139002 |
aaggatctttgcaaatgcctcactactctcacatatactccggttttacttacatcttcgaatgatagttttgagcaatttatgtcttgggttctgtc |
9138905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 8416310 - 8416529
Alignment:
| Q |
1 |
ctgaagcgacagcggcaggaaaataggattagtgagttgcctgactgcatattgctccacatactgaggtttcttgaagcacaagatgctgttcagactt |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||| |||| ||||||||||||| ||||||||||| ||||| |
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| T |
8416310 |
ctgaagcgacagcggcgggaaaataggattagtgagttgcctgactgcttattgctccatatattgagttttcttgaagcacgagatgctgttcggactt |
8416409 |
T |
|
| Q |
101 |
gtatcttgtctaaacggtggaaggatctttgcaaacgcgtcactactctcacatatactcggtctggagatacatcttcaaatgatagttttgagcaatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| | ||||||||| || || | | | || |||| |
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| T |
8416410 |
gtatcttgtctaaacggtggaaggatctttgcaaacgcctcactactctcacatatactccgtctctatttacatcttcgtattatgggtataagaaatt |
8416509 |
T |
|
| Q |
201 |
tatgtcttgggttctgtcca |
220 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
8416510 |
tatgtcttgggttctgtcca |
8416529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 8410674 - 8410876
Alignment:
| Q |
18 |
ggaaaataggattagtgagttgcctgactgcatattgctccacatactgaggtttcttgaagcacaagatgctgttcagacttgtatcttgtctaaacgg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| | ||| |||| ||||||||||||| ||||||||||| |||||| ||||||||||||||| |
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| T |
8410674 |
ggaaaataggattagtgagttgcctgactgcttattgctctagatattgagttttcttgaagcacgagatgctgttcggacttgcatcttgtctaaacgg |
8410773 |
T |
|
| Q |
118 |
tggaaggatctttgcaaacgcgtcactactctcacatatactcggtctggagatacatcttcaaatgatagttttgagcaatttatgtcttgggttctgt |
217 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| |||| | |||||| ||| |||| |||||| || | ||||||||||||||||||| |
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| T |
8410774 |
tggaaggatctttgcaaacgcctcactactctcacatatactccgtctatacatacatattcggatgaaagttttaagaactttatgtcttgggttctgt |
8410873 |
T |
|
| Q |
218 |
cca |
220 |
Q |
| |
|
||| |
|
|
| T |
8410874 |
cca |
8410876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 157
Target Start/End: Complemental strand, 8356616 - 8356480
Alignment:
| Q |
21 |
aaataggattagtgagttgcctgactgcatattgctccacatactgaggtttcttgaagcacaagatgctgttcagacttgtatcttgtctaaacggtgg |
120 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||| |||||||| |||| |||||||||||| |||||| ||||| |||||| |||||||||||||| ||| |
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|
| T |
8356616 |
aaataggattagtgagttgccagactgcttattggtccacatattgagttttcttgaagcagaagatgttgttcggacttgcatcttgtctaaacgatgg |
8356517 |
T |
|
| Q |
121 |
aaggatctttgcaaacgcgtcactactctcacatata |
157 |
Q |
| |
|
|||||||||||||||||| || ||| ||||||||||| |
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|
| T |
8356516 |
aaggatctttgcaaacgcctccctattctcacatata |
8356480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 21 - 157
Target Start/End: Original strand, 8403626 - 8403762
Alignment:
| Q |
21 |
aaataggattagtgagttgcctgactgcatattgctccacatactgaggtttcttgaagcacaagatgctgttcagacttgtatcttgtctaaacggtgg |
120 |
Q |
| |
|
|||||||||| ||||||| |||||||||||| | ||||||||| |||| ||||||||||||| ||| ||||||| |||||| |||||||||||||| ||| |
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|
| T |
8403626 |
aaataggattggtgagttacctgactgcatactcctccacataatgagttttcttgaagcacgagacgctgttcggacttgcatcttgtctaaacgatgg |
8403725 |
T |
|
| Q |
121 |
aaggatctttgcaaacgcgtcactactctcacatata |
157 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||| |
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|
| T |
8403726 |
aaggatctttgcaaacgtctcactactctcgcatata |
8403762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 157
Target Start/End: Complemental strand, 43144975 - 43144839
Alignment:
| Q |
21 |
aaataggattagtgagttgcctgactgcatattgctccacatactgaggtttcttgaagcacaagatgctgttcagacttgtatcttgtctaaacggtgg |
120 |
Q |
| |
|
|||| |||||||||||||||| ||||||||| ||||||| ||| |||| ||||||||||||| ||| | ||||| ||||| ||||||||||| || ||| |
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|
| T |
43144975 |
aaattggattagtgagttgcccgactgcatactgctccatataatgagttttcttgaagcacgagacgttgttcgaacttgcatcttgtctaagcgatgg |
43144876 |
T |
|
| Q |
121 |
aaggatctttgcaaacgcgtcactactctcacatata |
157 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||| |
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|
| T |
43144875 |
aaggatctttgcaaacgtgtcactactctcaaatata |
43144839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 21 - 157
Target Start/End: Complemental strand, 8359662 - 8359526
Alignment:
| Q |
21 |
aaataggattagtgagttgcctgactgcatattgctccacatactgaggtttcttgaagcacaagatgctgttcagacttgtatcttgtctaaacggtgg |
120 |
Q |
| |
|
||||| ||| ||| |||| |||||||||||| ||||||||||| |||| ||| | |||| | ||| ||||||| ||||| |||||||||||||| ||| |
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|
| T |
8359662 |
aaatatgatcagtaagttacctgactgcatactgctccacataatgagttttttgaaagctcgagacgctgttcgaacttgcatcttgtctaaacgatgg |
8359563 |
T |
|
| Q |
121 |
aaggatctttgcaaacgcgtcactactctcacatata |
157 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||| |
|
|
| T |
8359562 |
aaggatctttgcaaacgtctccctactctcacatata |
8359526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 21 - 157
Target Start/End: Original strand, 5476165 - 5476301
Alignment:
| Q |
21 |
aaataggattagtgagttgcctgactgcatattgctccacatactgaggtttcttgaagcacaagatgctgttcagacttgtatcttgtctaaacggtgg |
120 |
Q |
| |
|
|||||||||||||||||| |||||||||||| | ||||||||| |||| ||||||||||||| ||||||||||| |||||| |||||||||||||| ||| |
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|
| T |
5476165 |
aaataggattagtgagttacctgactgcatactcctccacataatgagttttcttgaagcacgagatgctgttcggacttgcatcttgtctaaacgatgg |
5476264 |
T |
|
| Q |
121 |
aaggatctttgcaaacgcgtcactactctcacatata |
157 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5476265 |
aaggatctttgcaaacgtctcactactctcacatata |
5476301 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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