View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10758_low_15 (Length: 227)

Name: NF10758_low_15
Description: NF10758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10758_low_15
NF10758_low_15
[»] chr2 (11 HSPs)
chr2 (1-227)||(30384960-30385186)
chr2 (1-227)||(30395712-30395938)
chr2 (1-212)||(30476500-30476711)
chr2 (1-219)||(23783276-23783494)
chr2 (1-212)||(23768595-23768806)
chr2 (1-192)||(30484698-30484889)
chr2 (1-227)||(8378920-8379146)
chr2 (1-206)||(30437554-30437759)
chr2 (13-212)||(30425260-30425459)
chr2 (1-206)||(30469365-30469570)
chr2 (1-212)||(30431293-30431504)
[»] chr5 (1 HSPs)
chr5 (1-204)||(41626769-41626972)
[»] chr8 (4 HSPs)
chr8 (61-189)||(15858526-15858654)
chr8 (61-189)||(15865594-15865722)
chr8 (1-210)||(15844331-15844540)
chr8 (61-189)||(15851626-15851754)
[»] chr4 (1 HSPs)
chr4 (61-165)||(11019459-11019563)


Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 30385186 - 30384960
Alignment:
Q  1 aagttcaaatgagaaatgttgcaaaatcaatgtcattgccatttttgcttccattagagaaaagttttgtccaatgcaaattcgaggaccccatccaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30385186 aagttcaaatgagaaatgttgcaaaatcaatgtcattgccatttttgcttccattagagaaaagttttgtccaatgcaaattcgaggaccccatccaaat 30385087  T
Q  101 ggaaaaaatgaaactcttccatttgttgctttggaaattcctccagaaaatctttcaggattgaacattttagcatcatcaccccatagttcgcagtcat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30385086 ggaaaaaatgaaactcttccatttgttgctttggaaattcctccaaaaaatctttcaggattgaacattttagcatcatcaccccatagttcgcagtcat 30384987  T
Q  201 ggtgaatcaaaagaattggtaagaaaa 227  Q
    |||||||||||||||||||||||||||    
T  30384986 ggtgaatcaaaagaattggtaagaaaa 30384960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 30395938 - 30395712
Alignment:
Q  1 aagttcaaatgagaaatgttgcaaaatcaatgtcattgccatttttgcttccattagagaaaagttttgtccaatgcaaattcgaggaccccatccaaat 100  Q
    |||||||||||| |||||||||||||||| || || |||||| |||||||||||||| |||||||||||||||||||||||||  |||||||||||||||    
T  30395938 aagttcaaatgaaaaatgttgcaaaatcattgacaatgccatctttgcttccattagggaaaagttttgtccaatgcaaattcttggaccccatccaaat 30395839  T
Q  101 ggaaaaaatgaaactcttccatttgttgctttggaaattcctccagaaaatctttcaggattgaacattttagcatcatcaccccatagttcgcagtcat 200  Q
    ||||||||||||||||| |||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||| ||||||||    
T  30395838 ggaaaaaatgaaactctaccatttgttgctttagaaattcctccggaaaatctctcaggattgaacattttagcatcatcgccccatagtttgcagtcat 30395739  T
Q  201 ggtgaatcaaaagaattggtaagaaaa 227  Q
    | |||||||||||||||||||||||||    
T  30395738 gatgaatcaaaagaattggtaagaaaa 30395712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 30476711 - 30476500
Alignment:
Q  1 aagttcaaatgagaaatgttgcaaaatcaatgtcattgccatttttgcttccattagagaaaagttttgtccaatgcaaattcgaggaccccatccaaat 100  Q
    ||||||||||||||| | ||  ||||||| || ||||||||| ||||||||||  |  ||||| |||||||||||||||||||  ||||||| |||||||    
T  30476711 aagttcaaatgagaatttttttaaaatcattgccattgccatctttgcttccaacatggaaaaattttgtccaatgcaaattcttggaccccctccaaat 30476612  T
Q  101 ggaaaaaatgaaactcttccatttgttgctttggaaattcctccagaaaatctttcaggattgaacattttagcatcatcaccccatagttcgcagtcat 200  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||| ||||||||||||||| ||||||    
T  30476611 ggaaaaaatgaaaatctcccatttgttgctttggaaattcctccagaaaatctctcaggattgaacaccttagcatcttcaccccatagttcggagtcat 30476512  T
Q  201 ggtgaatcaaaa 212  Q
    |||||| |||||    
T  30476511 ggtgaaccaaaa 30476500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 23783276 - 23783494
Alignment:
Q  1 aagttcaaatgagaaatgttgcaaaatcaatgtcattgccatttttgcttccattagagaaaagttttgtccaatgcaaattcgaggaccccatccaaat 100  Q
    |||||||||||| ||||  |  |||||||||| ||||||||| ||||||||||  || |||||||||||||||||||| |||| |||||||  ||||||     
T  23783276 aagttcaaatgaaaaattctttaaaatcaatgccattgccatctttgcttccaacagggaaaagttttgtccaatgcagattctaggacccgctccaaac 23783375  T
Q  101 ggaaaaaatgaaactcttccatttgttgctttggaaattcctccagaaaatctttcaggattgaacattttagcatcatcaccccatagttcgcagtcat 200  Q
    |||||| |||||| ||| || |||||||||||||||||||| ||||||||||| ||||||||||| || ||||||||||||||||||||||| || ||||    
T  23783376 ggaaaatatgaaaatctaccgtttgttgctttggaaattccaccagaaaatctctcaggattgaaaatcttagcatcatcaccccatagttcacaatcat 23783475  T
Q  201 ggtgaatcaaaagaattgg 219  Q
    |||||||||||| ||||||    
T  23783476 ggtgaatcaaaacaattgg 23783494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 23768806 - 23768595
Alignment:
Q  1 aagttcaaatgagaaatgttgcaaaatcaatgtcattgccatttttgcttccattagagaaaagttttgtccaatgcaaattcgaggaccccatccaaat 100  Q
    |||||||||||| ||||  || |||||||||| ||||||||| |||||||||| |||||||||| | ||||||||||| |||| ||||||   ||||||     
T  23768806 aagttcaaatgaaaaattctgtaaaatcaatgccattgccatctttgcttccaatagagaaaaggtctgtccaatgcagattctaggacctgctccaaac 23768707  T
Q  101 ggaaaaaatgaaactcttccatttgttgctttggaaattcctccagaaaatctttcaggattgaacattttagcatcatcaccccatagttcgcagtcat 200  Q
    |||||| |||||| ||| || |||||||||||||||||||| ||||||||||| ||||||||||| || ||||||||||||||||||||||| || ||||    
T  23768706 ggaaaatatgaaaatctaccgtttgttgctttggaaattccaccagaaaatctctcaggattgaaaatcttagcatcatcaccccatagttcacaatcat 23768607  T
Q  201 ggtgaatcaaaa 212  Q
    ||||||||||||    
T  23768606 ggtgaatcaaaa 23768595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 30484889 - 30484698
Alignment:
Q  1 aagttcaaatgagaaatgttgcaaaatcaatgtcattgccatttttgcttccattagagaaaagttttgtccaatgcaaattcgaggaccccatccaaat 100  Q
    |||||||||||||||||| |||||||||||||| |||||||| ||||||||||  |  ||||||||||||||||| ||||||| |||||||| |||||||    
T  30484889 aagttcaaatgagaaatgctgcaaaatcaatgttattgccatctttgcttccaacatggaaaagttttgtccaatacaaattctaggaccccctccaaat 30484790  T
Q  101 ggaaaaaatgaaactcttccatttgttgctttggaaattcctccagaaaatctttcaggattgaacattttagcatcatcaccccatagttc 192  Q
    ||||||||||||  ||| |||||||||||||| |||| |||| | | |||||| |||||||||||||  |||||||| ||||||||||||||    
T  30484789 ggaaaaaatgaatttctaccatttgttgcttttgaaactccttctgcaaatctctcaggattgaacaccttagcatcttcaccccatagttc 30484698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 8378920 - 8379146
Alignment:
Q  1 aagttcaaatgagaaatgttgcaaaatcaatgtcattgccatttttgcttccattagagaaaagttttgtccaatgcaaattcgaggaccccatccaaat 100  Q
    |||||||||  |||||| ||| ||||||| || || |||||| |||||||||| ||| |||||||||||||| ||||||| || |||||||| |||||||    
T  8378920 aagttcaaaatagaaattttgtaaaatcattgacactgccatctttgcttccaatagggaaaagttttgtcccatgcaaactctaggaccccctccaaat 8379019  T
Q  101 ggaaaaaatgaaactcttccatttgttgctttggaaattcctccagaaaatctttcaggattgaacattttagcatcatcaccccatagttcgcagtcat 200  Q
    |||||| ||  || ||| |||||||||||||||||||||||| ||| |||||| |||||||||||||| || ||||||||||||||||||||   || ||    
T  8379020 ggaaaatatataaatctaccatttgttgctttggaaattccttcagcaaatctctcaggattgaacatctttgcatcatcaccccatagttcattgttat 8379119  T
Q  201 ggtgaatcaaaagaattggtaagaaaa 227  Q
    | |||| ||||| ||||||||||||||    
T  8379120 gttgaagcaaaataattggtaagaaaa 8379146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 30437759 - 30437554
Alignment:
Q  1 aagttcaaatgagaaatgttgcaaaatcaatgtcattgccatttttgcttccattagagaaaagttttgtccaatgcaaattcgaggaccccatccaaat 100  Q
    |||||| ||||||||| |||| ||||||| ||  || ||||| ||||||||||  | ||||||||| |||||||||||||||| |||||||| |||||||    
T  30437759 aagttcgaatgagaaacgttgtaaaatcattgctatcgccatctttgcttccaacatagaaaagttctgtccaatgcaaattctaggaccccctccaaat 30437660  T
Q  101 ggaaaaaatgaaactcttccatttgttgctttggaaattcctccagaaaatctttcaggattgaacattttagcatcatcaccccatagttcgcagtcat 200  Q
    |||| |||||||  ||||||||||||||||||  |||  ||| |||||||||| |||||||||||||  |||||||| ||||||||||||||| ||||||    
T  30437659 ggaacaaatgaatttcttccatttgttgctttcaaaacaccttcagaaaatctctcaggattgaacaccttagcatcgtcaccccatagttcggagtcat 30437560  T
Q  201 ggtgaa 206  Q
    ||||||    
T  30437559 ggtgaa 30437554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 13 - 212
Target Start/End: Complemental strand, 30425459 - 30425260
Alignment:
Q  13 gaaatgttgcaaaatcaatgtcattgccatttttgcttccattagagaaaagttttgtccaatgcaaattcgaggaccccatccaaatggaaaaaatgaa 112  Q
    |||| |||| ||||||| ||  |||||||| ||||||||||  | |||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  30425459 gaaacgttgtaaaatcattgctattgccatctttgcttccaacatagaaaagttttgtccaatgcaaattctaggaccccctccaaatggaaaaaatgaa 30425360  T
Q  113 actcttccatttgttgctttggaaattcctccagaaaatctttcaggattgaacattttagcatcatcaccccatagttcgcagtcatggtgaatcaaaa 212  Q
      ||||||||||||||||||  |||  ||| | |||||||| || ||||||||||  |||||||||||||||||||||||   ||||||||||| |||||    
T  30425359 tttcttccatttgttgcttttaaaacaccttctgaaaatctctcgggattgaacaccttagcatcatcaccccatagttctatgtcatggtgaaccaaaa 30425260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 30469570 - 30469365
Alignment:
Q  1 aagttcaaatgagaaatgttgcaaaatcaatgtcattgccatttttgcttccattagagaaaagttttgtccaatgcaaattcgaggaccccatccaaat 100  Q
    |||||||||||||||| |||| ||||||| ||  |||||||| ||||||||||  |  |||||||| |||||||||||||||| |||||||| | |||||    
T  30469570 aagttcaaatgagaaacgttgtaaaatcattgctattgccatctttgcttccaacatggaaaagttctgtccaatgcaaattctaggaccccctgcaaat 30469471  T
Q  101 ggaaaaaatgaaactcttccatttgttgctttggaaattcctccagaaaatctttcaggattgaacattttagcatcatcaccccatagttcgcagtcat 200  Q
    ||||||||||||  ||||||||| ||||||||  |||  ||| |||||||||| || ||||||||||  |||||||| ||||||||||||||   |||||    
T  30469470 ggaaaaaatgaatttcttccattggttgcttttaaaacaccttcagaaaatctctcgggattgaacaccttagcatcttcaccccatagttctatgtcat 30469371  T
Q  201 ggtgaa 206  Q
    ||||||    
T  30469370 ggtgaa 30469365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 30431504 - 30431293
Alignment:
Q  1 aagttcaaatgagaaatgttgcaaaatcaatgtcattgccatttttgcttccattagagaaaagttttgtccaatgcaaattcgaggaccccatccaaat 100  Q
    |||||||||||||||| |||| ||||||| ||  |||||||| ||||||||||  |  ||||||||||||||||| ||||||| |||||||| | |||||    
T  30431504 aagttcaaatgagaaacgttgtaaaatcattgctattgccatctttgcttccaacatggaaaagttttgtccaattcaaattctaggacccccttcaaat 30431405  T
Q  101 ggaaaaaatgaaactcttccatttgttgctttggaaattcctccagaaaatctttcaggattgaacattttagcatcatcaccccatagttcgcagtcat 200  Q
    |||| |||||||  ||||||||||||||||||  |||  ||| | |||||||| || ||||||||||  |||||||| ||||||||||||||   |||||    
T  30431404 ggaataaatgaatttcttccatttgttgcttttaaaacaccttctgaaaatctctcgggattgaacaccttagcatcttcaccccatagttctatgtcat 30431305  T
Q  201 ggtgaatcaaaa 212  Q
    |||||| |||||    
T  30431304 ggtgaaccaaaa 30431293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 41626769 - 41626972
Alignment:
Q  1 aagttcaaatgagaaatgttgcaaaatcaatgtcattgccatttttgcttccattagagaaaagttttgtccaatgcaaattcgaggaccccatccaaat 100  Q
    ||||| |||||||||||| || |||||||||||||||||||| |||||||||| ||||||||||||||| |||||||| || | ||||||||||||||||    
T  41626769 aagttgaaatgagaaatgctgtaaaatcaatgtcattgccatctttgcttccaatagagaaaagttttgcccaatgcagatcctaggaccccatccaaat 41626868  T
Q  101 ggaaaaaatgaaactcttccatttgttgctttggaaattcctccagaaaatctttcaggattgaacattttagcatcatcaccccatagttcgcagtcat 200  Q
    ||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||    
T  41626869 ggaaaaaatgaaactctaccgttcgttgctttggaaattcctccagaaaatctttcaggattgaacattttagcatcatcaccccataattcacaatcat 41626968  T
Q  201 ggtg 204  Q
    ||||    
T  41626969 ggtg 41626972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 61 - 189
Target Start/End: Original strand, 15858526 - 15858654
Alignment:
Q  61 aaagttttgtccaatgcaaattcgaggaccccatccaaatggaaaaaatgaaactcttccatttgttgctttggaaattcctccagaaaatctttcagga 160  Q
    ||||||||||||||  ||||||| ||||||||||||||| || ||| | ||||||  ||| |||||||| || | ||||||| ||| ||| ||||||||     
T  15858526 aaagttttgtccaagacaaattctaggaccccatccaaaagggaaataagaaacttgtccttttgttgccttcgcaattccttcagcaaacctttcaggt 15858625  T
Q  161 ttgaacattttagcatcatcaccccatag 189  Q
    ||||||   || |||||||||||||||||    
T  15858626 ttgaactcctttgcatcatcaccccatag 15858654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 61 - 189
Target Start/End: Original strand, 15865594 - 15865722
Alignment:
Q  61 aaagttttgtccaatgcaaattcgaggaccccatccaaatggaaaaaatgaaactcttccatttgttgctttggaaattcctccagaaaatctttcagga 160  Q
    ||||||||||||||  ||||||| ||||||||||||||| || ||| | |||||| |||| ||||| || || | ||||||| ||| ||| ||||||||     
T  15865594 aaagttttgtccaagacaaattctaggaccccatccaaaagggaaataagaaacttttccttttgtagcctttgcaattccttcagcaaacctttcaggt 15865693  T
Q  161 ttgaacattttagcatcatcaccccatag 189  Q
    ||||||   || |||||||||||||||||    
T  15865694 ttgaactcctttgcatcatcaccccatag 15865722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 15844331 - 15844540
Alignment:
Q  1 aagttcaaatgagaaatgttgcaaaatcaatgtcattgccatttttgcttccattagagaaaagttttgtccaatgcaaattcgaggaccccatccaaat 100  Q
    |||||||||||||||||  ||||  | |||||  ||||| || |||||||| | ||  | ||||||||||||||  ||||||| |||||||||||||||     
T  15844331 aagttcaaatgagaaattctgcagcaacaatgatattgctatctttgcttctaataaggtaaagttttgtccaagacaaattctaggaccccatccaaag 15844430  T
Q  101 ggaaaaaatgaaactcttccatttgttgctttggaaattcctccagaaaatctttcaggattgaacattttagcatcatcaccccatagttcgcagtcat 200  Q
    || ||| | ||||||  ||| |||||||| || | ||||||| ||| ||| ||||| || ||||||   || |||||||| |||||||| ||    ||||    
T  15844431 gggaaataagaaacttgtccttttgttgccttcgcaattccttcagcaaacctttcgggtttgaactcctttgcatcatccccccatagatcttgatcat 15844530  T
Q  201 ggtgaatcaa 210  Q
    ||||||||||    
T  15844531 ggtgaatcaa 15844540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 189
Target Start/End: Original strand, 15851626 - 15851754
Alignment:
Q  61 aaagttttgtccaatgcaaattcgaggaccccatccaaatggaaaaaatgaaactcttccatttgttgctttggaaattcctccagaaaatctttcagga 160  Q
    ||||||||||||||  ||||||| ||||||||||||||| || | | | ||||||   || ||||| || || | ||||||| ||||||| | |||||||    
T  15851626 aaagttttgtccaagacaaattctaggaccccatccaaaagggatatacgaaacttggccttttgtggcctttgcaattccttcagaaaaccgttcagga 15851725  T
Q  161 ttgaacattttagcatcatcaccccatag 189  Q
    |||||| | || |||||||||||||||||    
T  15851726 ttgaacttctttgcatcatcaccccatag 15851754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 165
Target Start/End: Complemental strand, 11019563 - 11019459
Alignment:
Q  61 aaagttttgtccaatgcaaattcgaggaccccatccaaatggaaaaaatgaaactcttccatttgttgctttggaaattcctccagaaaatctttcagga 160  Q
    ||||||||||||||| |||| ||  |||||||||||||| || ||  | |||||| | ||||||||||| || |||| |||| |||| |||||||| ||     
T  11019563 aaagttttgtccaatacaaagtcttggaccccatccaaaaggcaagtaagaaactttgccatttgttgcctttgaaactccttcagagaatctttctggt 11019464  T
Q  161 ttgaa 165  Q
    |||||    
T  11019463 ttgaa 11019459  T

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