View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10758_low_2 (Length: 440)
Name: NF10758_low_2
Description: NF10758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10758_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 14 - 425
Target Start/End: Original strand, 33275582 - 33275987
Alignment:
| Q |
14 |
agaaaactaatgacacaattaatgaagcagagtgaaggaactcaatagaaaaaacacctatcccttcgaattaaaccccaaatctcatactatcctatct |
113 |
Q |
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| T |
33275582 |
agaaaacaaatgacacaattaatgaagcagagtgaaggaacacaataggaaaa-caccg-----------ttaaaccccaaatctcttactatcctatct |
33275669 |
T |
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| Q |
114 |
tgttcattacacatcacactcacctcattggtggaaactgtccttatctcaccttgcccaacctcttgcctcccttttgttcccactttccattcccatt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33275670 |
tgttcattacacatcacactcacctcattggtggaaactgtccttatctcaccttgcccaacctcttgcctcccttttgttcccactttccattcccatt |
33275769 |
T |
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| Q |
214 |
ctcttcaatttcactaaacgtgactcacacattcacctacaatttcctcttgaaacatatgaagttctaaattcaaacct------ttcaactcaagctt |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
33275770 |
ctcttcaatttcactaaacgtgactcacacattcacctacaatttcctcttgaaacacatgaagttctaaattcaaacctttcaagttcaactcaagctt |
33275869 |
T |
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| Q |
308 |
aattctcaatacacccaccatatataaagagagtacaagggagaatataagatagcaataaacctaaggaaagaacaactccttaaagaaacataaacat |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33275870 |
aattctcaatacacccaccatatataaagagagtacaagggagaatataagatagcaataaacctaaggaaagaacaactccttaaagaaacataaacat |
33275969 |
T |
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| Q |
408 |
tatcataacccaaacaca |
425 |
Q |
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|||||||||||||||||| |
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| T |
33275970 |
tatcataacccaaacaca |
33275987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 103
Target Start/End: Original strand, 33274462 - 33274550
Alignment:
| Q |
14 |
agaaaactaatgacacaattaatgaagcagagtgaaggaactcaatagaaaaaacacctatcccttcgaattaaaccccaaatctcatac |
103 |
Q |
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||||||| ||||||||||| |||||| || ||||||||| || |||||||| ||||| |||||||||||||||||||||||| |||| |
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| T |
33274462 |
agaaaacaaatgacacaatcaatgaatcatggtgaaggaatgcagtagaaaaa-cacctggcccttcgaattaaaccccaaatctaatac |
33274550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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