View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10758_low_4 (Length: 319)
Name: NF10758_low_4
Description: NF10758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10758_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 13 - 289
Target Start/End: Complemental strand, 12826114 - 12825839
Alignment:
| Q |
13 |
caaagggagttgtgtgtgggggagataggggaggcggttggttccttaacgaagtggcattttgagtggagaatggagttttttggttgggaggagcaac |
112 |
Q |
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| T |
12826114 |
caaaaggagttgtgtgtgggggagataggggaggcggttggttccttaacgaagtggcatttcgagtggagaagggagttttttggttgggaggagcaac |
12826015 |
T |
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| Q |
113 |
tatttgtgagtctcttgaatgatttggagaatatgaggtggtctcatgaagaggataggtggaggtggggtttggaagagtcagggannnnnnncggtca |
212 |
Q |
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| T |
12826014 |
tatttgtgagtctcttgaatgatttggagaatatgaggtggtctcatgaggaggataggtggcggtggggtttggaagagttaggga-ttttttcggtca |
12825916 |
T |
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| Q |
213 |
aatcaacatatgataagctagtggggttagtgttggaggaagatttgtggagtacggaggagaagagtgtttctgcc |
289 |
Q |
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| T |
12825915 |
aatcaacatattataagctagtggggttagtgttggaggaagatttgtggagtacggaggagaagagtgtttctgcc |
12825839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 28 - 194
Target Start/End: Original strand, 47819600 - 47819766
Alignment:
| Q |
28 |
gtgggggagataggggaggcggttggttccttaacgaagtggcattttgagtggagaatggagttttttggttgggaggagcaactatttgtgagtctct |
127 |
Q |
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| T |
47819600 |
gtgggagagataggggaggtagttggctcttcaacggagtgacattttgagtggaggagggagttttttgattgggaggagcaactaatagggaatcttt |
47819699 |
T |
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| Q |
128 |
tgaatgatttggagaatatgaggtggtctcatgaagaggataggtggaggtggggtttggaagagtc |
194 |
Q |
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| T |
47819700 |
tgggtgatttggaggatatgaggtggtcgcatgtggaggataggtggaggtgggggttggaagagtc |
47819766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 28571269 - 28571317
Alignment:
| Q |
151 |
tggtctcatgaagaggataggtggaggtggggtttggaagagtcaggga |
199 |
Q |
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| T |
28571269 |
tggtctcatgaggaagataggtggaagtggggtttggaggagtcgggga |
28571317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 199
Target Start/End: Original strand, 24188940 - 24189111
Alignment:
| Q |
28 |
gtgggggagataggggaggcggttggttccttaacgaagtggcattttgagtggagaatggagttttttggttgggaggagcaactatttgtgagtctct |
127 |
Q |
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| T |
24188940 |
gtgggtgacataggggaggtggtaggctcttcaagggagtggcattttgagtggagacgggatttttttgattgggaggagcaactcttcgcaaatctat |
24189039 |
T |
|
| Q |
128 |
tgaatgatttggagaatatgaggtggtctcatgaagaggataggtggaggtggggtttggaagagtcaggga |
199 |
Q |
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|| |||||||| |||| ||||||||||| || |||||||||| ||||||||| || ||||| |||| |
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| T |
24189040 |
tggtagatttggaaggcatgacttggtctcatgaggaagataggtggaagtggggtttagaggagtcgggga |
24189111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 123
Target Start/End: Complemental strand, 42749487 - 42749392
Alignment:
| Q |
28 |
gtgggggagataggggaggcggttggttccttaacgaagtggcattttgagtggagaatggagttttttggttgggaggagcaactatttgtgagt |
123 |
Q |
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| T |
42749487 |
gtgggagagataggggaggaggatggtgctttaacggtgtggaactttgattggagatgggagttttttgattgggaggagcaactttttgcgagt |
42749392 |
T |
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