View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10758_low_7 (Length: 274)
Name: NF10758_low_7
Description: NF10758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10758_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 33830175 - 33829911
Alignment:
| Q |
1 |
atgctaacaaactacggtggcttggctaacaagttaccctatgatcaagttaatctctagctgactaactcaattatttagctaacttgtattttaagca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33830175 |
atgctaacaaactacggtggcttggctaacaagttaccctatgatcaagttaatctctagctgactaactcaattatttagctaacttgtatcttaagca |
33830076 |
T |
|
| Q |
101 |
actaacaaactaactgcttatagtttgaattatacaactaacagttttttgcttgaatggaagcacacggagccttcacgttcttcgtgatgaatattat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
33830075 |
actaacaaactaactgcttatagtttgaattatacaactaacagttttttgcttgaatggaagcatacggagccttcacgttcttcgtgatgaatattat |
33829976 |
T |
|
| Q |
201 |
cgggatctacatcattgtgtctgtcttgtttataatctgagtaaaatgttgatttgtttctctgc |
265 |
Q |
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| T |
33829975 |
cgggatctacatcattgtgtgtgtcttgtttataatcagagtaaaatgttgatttgtttctctgc |
33829911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 33837791 - 33838055
Alignment:
| Q |
1 |
atgctaacaaactacggtggcttggctaacaagttaccctatgatcaagttaatctctagctgactaactcaattatttagctaacttgtattttaagca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33837791 |
atgctaacaaactacggtggcttggctaacaagttaccctatgatcaagttaatctctagctgactaactcaattatttagctaacttgtatcttaagca |
33837890 |
T |
|
| Q |
101 |
actaacaaactaactgcttatagtttgaattatacaactaacagttttttgcttgaatggaagcacacggagccttcacgttcttcgtgatgaatattat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
33837891 |
actaacaaactaactgcttatagtttgaattatacaactaacagttttttgcttgaatggaagcatacggagccttcacgttcttcgtgatgaatattat |
33837990 |
T |
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| Q |
201 |
cgggatctacatcattgtgtctgtcttgtttataatctgagtaaaatgttgatttgtttctctgc |
265 |
Q |
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|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
33837991 |
cgggatctacatcattgtgtgtgtcttgtttataatcagagtaaaatgttgatttgtttctctgc |
33838055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 141
Target Start/End: Complemental strand, 33087495 - 33087392
Alignment:
| Q |
44 |
atcaagttaatct----ctagctgactaactca--attatttagctaacttgtattttaagcaactaacaaactaactgcttatagtttgaattatacaa |
137 |
Q |
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||||||||||||| |||||| ||||||||| |||||| ||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||| |
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| T |
33087495 |
atcaagttaatctctaactagctaactaactcagtcttatttcgctaacttgtagcttaagcaacgaacaaactaattgcttatagtttgaattatacaa |
33087396 |
T |
|
| Q |
138 |
ctaa |
141 |
Q |
| |
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|||| |
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|
| T |
33087395 |
ctaa |
33087392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 41836873 - 41836734
Alignment:
| Q |
1 |
atgctaacaaactacggtggcttggctaacaagttaccctatgatcaagttaatctctagctg--actaactcaat--tatttagctaacttgtatttta |
96 |
Q |
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||||||| |||||||| | |||| |||||||| ||| | |||||||| ||||||||| || ||||||||||| ||||||||||||||||| || |
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| T |
41836873 |
atgctaataaactacgcttacttgattaacaagtaaccgtgtgatcaagataatctctaactataactaactcaatcttatttagctaacttgtagcata |
41836774 |
T |
|
| Q |
97 |
agcaactaacaaactaactgcttatagtttgaattataca |
136 |
Q |
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| |||||||||||| ||| |||| |||| ||||||||| |
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| T |
41836773 |
aacaactaacaaaccgactacttagcgtttaaattataca |
41836734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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