View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10758_low_9 (Length: 256)
Name: NF10758_low_9
Description: NF10758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10758_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 4175174 - 4174942
Alignment:
| Q |
16 |
gaaatttactcattcaaccgtgattttattatttttaccgaacttagttgaaaaagcatttggcttttgtcaaatgtgtttaaacacgattctaatnnnn |
115 |
Q |
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| T |
4175174 |
gaaatttactcattcaaccgtgattttatt---tttaccgaacttagttgaaaaaacatttggcttgtgtcaaatgtgtttaaacacgattctaataaaa |
4175078 |
T |
|
| Q |
116 |
nnnn-tatataaagctaagcacatacatgattggttatgactctaaaaacatagtgcagaaaaggatcttacaaacataatggccaatcatgaagctctg |
214 |
Q |
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||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4175077 |
atatatatatgaagctaagcacatatatgattggttatgactctaaaaacatagtgcagaaaaggatcttacaaacataatggccaatcatgaagctctg |
4174978 |
T |
|
| Q |
215 |
gtcctaaaaactattaacaaattgatttcatctctc |
250 |
Q |
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||||||||||||||||||||||||||||||| |||| |
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| T |
4174977 |
gtcctaaaaactattaacaaattgatttcatgtctc |
4174942 |
T |
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