View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10759_high_2 (Length: 253)
Name: NF10759_high_2
Description: NF10759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10759_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 5 - 235
Target Start/End: Complemental strand, 39868064 - 39867834
Alignment:
| Q |
5 |
gttacaaaaataccttaacatataaacattccaaggagtgctttcagttctacacttatcggtgccatgagttcagcatttcaaataacaagtgggttac |
104 |
Q |
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| T |
39868064 |
gttacaaaaataccttaacatataaacattccaaggagtgctttcagttctacacttatcggtgccatgagttcagcatttcaaataacaagtgggttac |
39867965 |
T |
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| Q |
105 |
aaaacaaggtctgcatccacaattcaggacataacttcaaggtttgtgatgtctcaaaaactacatcgcaacaacaattaatactgcaccagccacattt |
204 |
Q |
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| T |
39867964 |
aaaacaaggtctgcatccacaattcaggacataacttcaaggtttgtgatgtctcaaaaactacatcgcaacaacaattaatactgcatcagccacattt |
39867865 |
T |
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| Q |
205 |
taactgcaactctccacaatattgagaatca |
235 |
Q |
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| T |
39867864 |
taactgcaactctccacaatattgagaatca |
39867834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 50 - 234
Target Start/End: Complemental strand, 43833450 - 43833263
Alignment:
| Q |
50 |
agttctacacttatcggtgccatgagttcagcatttcaaataa-caagt-gggttacaaaacaaggtctgcatccacaattcaggacataa-cttcaagg |
146 |
Q |
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| T |
43833450 |
agttcaacagttatcggtgccttgagttcatcatttcaaaaaaacaagtagggtttcaaaacaaggtctgcaaccacaattcaggacacaaacatcaagg |
43833351 |
T |
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| Q |
147 |
tttgtgatgtctcaaaaactacatcgcaacaacaattaatactgcaccagccacattttaactgcaactctccacaatattgagaatc |
234 |
Q |
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| T |
43833350 |
tttttgatgtctcaaaaaccgcatcacaacaacaattaagactgcatcagccacattttaactgcaattctccacaatatcgagaatc |
43833263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 43833515 - 43833478
Alignment:
| Q |
2 |
tgcgttacaaaaataccttaacatataaacattccaag |
39 |
Q |
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| T |
43833515 |
tgcgttacaaaaataccttaacatataaacattccaag |
43833478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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