View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10759_low_1 (Length: 444)
Name: NF10759_low_1
Description: NF10759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10759_low_1 |
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| [»] scaffold0112 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 4 - 426
Target Start/End: Complemental strand, 7643467 - 7643045
Alignment:
| Q |
4 |
agagagatgaacttaagagaggatatgaccaacttttatactttatttcctgttttaattgtgggatttgttatgctagttaacgataattaataggtat |
103 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
7643467 |
agagaaatgaacttaagagaggatatgaccaacttttatactttattttctgttttaattgtgggatttgttatactagttaacgataactaataggtat |
7643368 |
T |
|
| Q |
104 |
tcatttttatctttctttaatgaaggtccttaataggttgatgatcttgttaagtaaaggacttccccattggaattgctcttagcctcttatatattat |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7643367 |
ccatttttatctttctttaatgaaggtccttaataggttgatgatcttgttaagtaaaggacttccccattggaattgctcttagcctcttatatattat |
7643268 |
T |
|
| Q |
204 |
tcaagataaggaagtgcaatgtcccataaattgtgtgagttgtggtggtctgcataagaagcttgctcatatttgtttcgagtgtcattttactatgaag |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7643267 |
tcaagataaggaagtgcaatgtcccataaattgtgtgagttgtggtggtctgcataagaagcttgctcatatttgtttcgagtgtcattttactatgaag |
7643168 |
T |
|
| Q |
304 |
gtttggcatatgattggtctttggaatgtggttcatgaggcattttttgaaaataattcagcagttgatgccattttcaaatcgttgcatcagctctcgc |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7643167 |
gtttggcatatgattggtctttggaatgtggttcatgaggcattttttgaaaataattcagcagttgatgccattttcaaatcgttgcatcagctctcgc |
7643068 |
T |
|
| Q |
404 |
gagaatttggtcaatgatttgca |
426 |
Q |
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| T |
7643067 |
gagaatttggtcaatgatttgca |
7643045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 265 - 426
Target Start/End: Original strand, 20250718 - 20250879
Alignment:
| Q |
265 |
cttgctcatatttgtttcgagtgtcattttactatgaaggtttggcatatgattggtctttggaatgtggttcatgaggcattttttgaaaataattcag |
364 |
Q |
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||||| ||||||||||| ||||||| ||||||| || ||||||||| || |||||| |||||||||||||||||||||| ||| | |||| ||||||| |
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| T |
20250718 |
cttgcacatatttgttttgagtgtccttttactgtgcaggtttggcgtaagattggcctttggaatgtggttcatgaggtgtttctcaaaaagaattcag |
20250817 |
T |
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| Q |
365 |
cagttgatgccattttcaaatcgttgcatcagctctcgcgagaatttggtcaatgatttgca |
426 |
Q |
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| T |
20250818 |
cagttgatgccattttcgaattgctacatcagctttcgcaagaacttggtcaacgatttgca |
20250879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 203 - 426
Target Start/End: Complemental strand, 43218963 - 43218740
Alignment:
| Q |
203 |
ttcaagataaggaagtgcaatgtcccataaattgtgtgagttgtggtggtctgcataagaagcttgctcatatttgtttcgagtgtcattttactatgaa |
302 |
Q |
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|||||||||| | | |||||||||||| || ||||||||||||| || | |||||| || | ||||| ||||||||||| ||||||| ||||||| || | |
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| T |
43218963 |
ttcaagataaaggattgcaatgtcccacaagttgtgtgagttgttgttgcctgcatgaggaccttgcacatatttgttttgagtgtccttttactgtgca |
43218864 |
T |
|
| Q |
303 |
ggtttggcatatgattggtctttggaatgtggttcatgaggcattttttgaaaataattcagcagttgatgccattttcaaatcgttgcatcagctctcg |
402 |
Q |
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|||||||| || |||||| |||||||||||||||||||||| ||| | ||||| |||||||||||||||||||||||| ||| | | |||||||||||| |
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| T |
43218863 |
ggtttggcgtaagattggcctttggaatgtggttcatgaggtgtttctcgaaaagaattcagcagttgatgccattttcgaattgctacatcagctctcg |
43218764 |
T |
|
| Q |
403 |
cgagaatttggtcaatgatttgca |
426 |
Q |
| |
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| |||| |||||||| |||||||| |
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| T |
43218763 |
caagaacttggtcaacgatttgca |
43218740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 203 - 426
Target Start/End: Original strand, 26131055 - 26131277
Alignment:
| Q |
203 |
ttcaagataaggaagtgcaatgtcccataaattgtgtgagttgtggtggtctgcataagaagcttgctcatatttgtttcgagtgtcattttactatgaa |
302 |
Q |
| |
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|||||||||| | |||||||||||||| || |||||||||||||||||| |||||| || | |||| ||||||||||| ||||||| ||||| | || | |
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| T |
26131055 |
ttcaagataaaggagtgcaatgtcccacaagttgtgtgagttgtggtggcctgcatgaggaccttgtacatatttgttttgagtgtccttttaatttgca |
26131154 |
T |
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| Q |
303 |
ggtttggcatatgattggtctttggaatgtggttcatgaggcattt-tttgaaaataattcagcagttgatgccattttcaaatcgttgcatcagctctc |
401 |
Q |
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| T |
26131155 |
ggtttggcatatgattggcctttggaatgcggttcatgaggtgtttcttaaaaaagaattca--aattgatgccattttcgaattgttacatcagctctc |
26131252 |
T |
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| Q |
402 |
gcgagaatttggtcaatgatttgca |
426 |
Q |
| |
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|| |||| |||||||| |||||||| |
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| T |
26131253 |
gcaagaacttggtcaacgatttgca |
26131277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0112
Description:
Target: scaffold0112; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 203 - 426
Target Start/End: Original strand, 33756 - 33979
Alignment:
| Q |
203 |
ttcaagataaggaagtgcaatgtcccataaattgtgtgagttgtggtggtctgcataagaagcttgctcatatttgtttcgagtgtcattttactatgaa |
302 |
Q |
| |
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|||||||||| |||| |||||||||||| || |||||||| || ||||| ||| || | ||||||||||||||||| || |||| ||||||| || | |
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| T |
33756 |
ttcaagataaaagagtgtaatgtcccataagttttgtgagttatgctggtccacatgaggaccttgctcatatttgtttagaatgtccttttactgtgca |
33855 |
T |
|
| Q |
303 |
ggtttggcatatgattggtctttggaatgtggttcatgaggcattttttgaaaataattcagcagttgatgccattttcaaatcgttgcatcagctctcg |
402 |
Q |
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|||||||| || | |||||||||||| |||||||||| | ||| ||||||| |||| ||||| ||||||||| ||| ||| | | ||||| || || |
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| T |
33856 |
ggtttggcgtacaaccggtctttggaatatggttcatgatgtgtttcttgaaaagaatttagcagctgatgccatattcgaattgctacatcaactttca |
33955 |
T |
|
| Q |
403 |
cgagaatttggtcaatgatttgca |
426 |
Q |
| |
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| ||||||| ||||| |||||||| |
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| T |
33956 |
caagaatttagtcaacgatttgca |
33979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 203 - 377
Target Start/End: Original strand, 8789655 - 8789829
Alignment:
| Q |
203 |
ttcaagataaggaagtgcaatgtcccataaattgtgtgagttgtggtggtctgcataagaagcttgctcatatttgtttcgagtgtcattttactatgaa |
302 |
Q |
| |
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|||||||||| | ||||||||||||||||| ||||||||| |||| ||||| ||| || | |||||||||||||||||| | |||| ||||||| || | |
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| T |
8789655 |
ttcaagataaaggagtgcaatgtcccataagttgtgtgagctgtgatggtccacatgaggaccttgctcatatttgtttcaaatgtccttttactgtgca |
8789754 |
T |
|
| Q |
303 |
ggtttggcatatgattggtctttggaatgtggttcatgaggcattttttgaaaataattcagcagttgatgccat |
377 |
Q |
| |
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|||||||| || | | |||||||||| ||||||||||| ||| ||||||| |||||| | | ||||||||| |
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| T |
8789755 |
ggtttggcgtacaaccgatctttggaatacggttcatgaggtgtttcttgaaaagaattcaaccgctgatgccat |
8789829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 243 - 412
Target Start/End: Original strand, 15617433 - 15617609
Alignment:
| Q |
243 |
ttgtggtggtctgcataagaagcttgctcatatttgtttcga-------gtgtcattttactatgaaggtttggcatatgattggtctttggaatgtggt |
335 |
Q |
| |
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|||||||||||| ||| || | |||||||||||||||||||| ||||| ||| |||||| ||||||||| || | | |||||||||||||||| |
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| T |
15617433 |
ttgtggtggtcttcatgaggatcttgctcatatttgtttcgaaattcgagtgtcctttaactatgcaggtttggcgtagggctcgtctttggaatgtggt |
15617532 |
T |
|
| Q |
336 |
tcatgaggcattttttgaaaataattcagcagttgatgccattttcaaatcgttgcatcagctctcgcgagaatttg |
412 |
Q |
| |
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| | || || ||| | ||||| ||||||| |||||||||||| || ||| || ||| ||||||||| |||||||| |
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| T |
15617533 |
taacgaagcgtttctcgaaaagaattcagtagttgatgccatctttgaattgtcacataagctctcgcaagaatttg |
15617609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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