View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10759_low_10 (Length: 341)
Name: NF10759_low_10
Description: NF10759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10759_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 26 - 295
Target Start/End: Complemental strand, 30508883 - 30508615
Alignment:
| Q |
26 |
tggtataaaggttactttacttgtcacaacagaagcaacaatattataagaaaatcatttcagtttgaacatgttcatattcacctcactgtcatcttcc |
125 |
Q |
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| T |
30508883 |
tggtataaaggttactt-acttgtcacaactgaagcaacaatattataagaaaagcatttcagtttgaacatgttcatattcacctcactgtcatcttcc |
30508785 |
T |
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| Q |
126 |
aaaagcacttattggtacaaattacaatcatctggattattctcaattttggatgacaatatatcctgcatatgcttcttcnnnnnnntatattctgaga |
225 |
Q |
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| T |
30508784 |
aaaagtacttattggtacaaattacaatcatctggattattctcaattttggatgacaatatatcctgcatatgcttcttcaaaaaaatatatcctgaga |
30508685 |
T |
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| Q |
226 |
tcaaaatcactatcacatagccatacaactatgagtgcacgttggcaatgacaagcaattagagttcaat |
295 |
Q |
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| T |
30508684 |
tcaaaatcactatcacatagccatacaactatgagtgcacgttggcaatggcaagcaattagagttcaat |
30508615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 295
Target Start/End: Complemental strand, 31985144 - 31985104
Alignment:
| Q |
255 |
tatgagtgcacgttggcaatgacaagcaattagagttcaat |
295 |
Q |
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| T |
31985144 |
tatgagtgtacgttggcagtgacaagcaattagagttcaat |
31985104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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