View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10759_low_11 (Length: 341)
Name: NF10759_low_11
Description: NF10759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10759_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 151 - 323
Target Start/End: Original strand, 51378638 - 51378810
Alignment:
| Q |
151 |
gattgttggcatattgcaggattgtcagtcgtgtcttggtgttggtatgggggatatggttgaattggaatgattggatgcggaatcaaaagaagttatc |
250 |
Q |
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| T |
51378638 |
gattgtcggcatattgcaggattgtcagtcgtgtcttggtgttggtatgggggatatggttgaattggaatgattggatgcggaatcaaaagaagttatc |
51378737 |
T |
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| Q |
251 |
tgctgtagaaattgtcaatttggtacagactatgtgcgaagagtggaaggcagttcagaactatgcagagaat |
323 |
Q |
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| T |
51378738 |
tgctgtagaaattgtcaatttggtacagactatgtgcgaagagtggaaggcagttcagaactatgcagagaat |
51378810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 51378400 - 51378513
Alignment:
| Q |
1 |
ttattcaagaggattggtgcagcatttggcgattaagagtgcctccgaaagtatgtaattcaatttggtgaatatgtagaagtttgcttaccgtcaaggg |
100 |
Q |
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| T |
51378400 |
ttattcaagaagattggtgcagcatttggcgattaagagtgcctccgaaagtatgtaattcaatttggtgaatatgtagaagtttgcttaccgtcaaggg |
51378499 |
T |
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| Q |
101 |
taacatttgagaat |
114 |
Q |
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| T |
51378500 |
taacatttgagaat |
51378513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 119 - 175
Target Start/End: Original strand, 51378568 - 51378624
Alignment:
| Q |
119 |
ggcatatactttttcaatgcttggctaaagttgattgttggcatattgcaggattgt |
175 |
Q |
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| T |
51378568 |
ggcatatactttttcaatgcttggctaaagttgattgttggcatattgcaggattgt |
51378624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 51791348 - 51791275
Alignment:
| Q |
11 |
ggattggtgcagcatttggcgattaagagtgcctccgaaagtatgtaattcaatttggtgaatatgtagaagtt |
84 |
Q |
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| T |
51791348 |
ggattggtacagtatttggtgagcaagagggcctccgaaagtatataatttaatttggtgaatatgtcgaagtt |
51791275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 323
Target Start/End: Complemental strand, 51790964 - 51790908
Alignment:
| Q |
268 |
atttggtacagactatgtgcgaagagtggaagg-cagttcagaactatgcagagaat |
323 |
Q |
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| T |
51790964 |
atttagtacagaccatgcgggaagagtggaagggcagttcagaactatgcagagaat |
51790908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 51791046 - 51790994
Alignment:
| Q |
172 |
ttgtcagtcgtgtcttggtgttggtatgggggatatggttgaattggaatgat |
224 |
Q |
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| T |
51791046 |
ttgtcagtcgtgttttcaggttggtctgggggatatggttgaattgtaatgat |
51790994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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