View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10759_low_13 (Length: 317)
Name: NF10759_low_13
Description: NF10759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10759_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 311
Target Start/End: Complemental strand, 19796713 - 19796420
Alignment:
| Q |
18 |
agaaaccgaaacccaccgatggggttgacagagaacatgtcaccaacgtttctctccaccggtaacccttgcctcgatttcttcttccatgttgttcctg |
117 |
Q |
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| T |
19796713 |
agaaaccgaaacccaccgatggggttgacagagaacatgtcaccaacgtttctctccaccggtaacccttgcctcgatttcttcttccatgttgttcctg |
19796614 |
T |
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| Q |
118 |
atactccttctgaaacactcattgagagactaaaaaatgcttggtcccaaaaccctctcaccgccctcaaactcgtctgtaacctccgtggcgtccgcgg |
217 |
Q |
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|||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19796613 |
atactccttctgaaacactcgttgagagactcaaacttgcttggtcccaaaaccctctcaccgccctcaaactcgtctgtaacctccgtggcgtccgcgg |
19796514 |
T |
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| Q |
218 |
taccggaaagtccaacaaagaaggcttctacgccgccgctctctggtttcatgaaaatcaccctaaaaccctagctaccaatgtttcttctctc |
311 |
Q |
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| T |
19796513 |
taccggaaagtccaacaaagaaggcttctacgccgccgctctctggtttcatgaaaatcaccctaaaaccctagctaccaatgttccttctctc |
19796420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 171; Significance: 8e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 21 - 307
Target Start/End: Complemental strand, 15835948 - 15835662
Alignment:
| Q |
21 |
aaccgaaacccaccgatggggttgacagagaacatgtcaccaacgtttctctccaccggtaacccttgcctcgatttcttcttccatgttgttcctgata |
120 |
Q |
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||||||||||||| ||||||||| || |||||||||||||| || |||||||||||||||||||| ||||| |||||||||||||||||||| || |||| |
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| T |
15835948 |
aaccgaaacccactgatggggttcaccgagaacatgtcaccgacatttctctccaccggtaacccatgccttgatttcttcttccatgttgtccccgata |
15835849 |
T |
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| Q |
121 |
ctccttctgaaacactcattgagagactaaaaaatgcttggtcccaaaaccctctcaccgccctcaaactcgtctgtaacctccgtggcgtccgcggtac |
220 |
Q |
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| T |
15835848 |
ctccctctgaaacacttgtcgagagactcaaactagcatggtcccataacccactcaccaccctcaaactcgtctgtaacctccgtggtgttcgtggtac |
15835749 |
T |
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| Q |
221 |
cggaaagtccaacaaagaaggcttctacgccgccgctctctggtttcatgaaaatcaccctaaaaccctagctaccaatgtttcttc |
307 |
Q |
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||| |||||||| ||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
15835748 |
cggcaagtccaataaagaaggcttctacgctgctgctctctggttgcatgaaaatcaccctaaaaccctagctaccaatgtttcttc |
15835662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 159 - 293
Target Start/End: Complemental strand, 47713624 - 47713490
Alignment:
| Q |
159 |
tggtcccaaaaccctctcaccgccctcaaactcgtctgtaacctccgtggcgtccgcggtaccggaaagtccaacaaagaaggcttctacgccgccgctc |
258 |
Q |
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|||||| | ||||| |||||| |||| |||||||||||||||||||| ||||| ||||||||||| |||||| | ||||| ||||||||||| |||| |
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| T |
47713624 |
tggtcctataacccactcaccacccttaaactcgtctgtaacctccgcggcgttcgcggtaccggcaagtccgatcgtgaaggtttctacgccgctgctc |
47713525 |
T |
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| Q |
259 |
tctggtttcatgaaaatcaccctaaaaccctagct |
293 |
Q |
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| T |
47713524 |
tttggtttcaccactaccaccctaaaaccctagct |
47713490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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