View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10759_low_14 (Length: 316)
Name: NF10759_low_14
Description: NF10759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10759_low_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 303
Target Start/End: Original strand, 2021290 - 2021575
Alignment:
| Q |
18 |
ccaacaatggtcaccatccacagcttcagtttggttatgtcagtttccaaggttcaaattctaaacctaatgcttaaaattgcttcggtattgtttacct |
117 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2021290 |
ccaacaatggtcaccatccacaacttcagtttggttatgtcagtttccaaggttcaaattctaaacctaatgcttaaaactgcttcggtattgtttacct |
2021389 |
T |
|
| Q |
118 |
caccaatcgagttacttacgcgatccacaacatgaattatttttacaattaactattaagtcaggccattctacaaccacagtaggaacaagctaagttg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2021390 |
caccaatcgagttacttacgcgatccacgacatgaattatttttacacttaactattaagtcaggccattctacaaccacagtgggaacaagctaagttg |
2021489 |
T |
|
| Q |
218 |
ctgtgaaaaaatatcatttttgtatgtgtgtagatgaggtttctctgaaaccgtttgttggtaatctccctattttgaataattct |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2021490 |
ctgtgaaaaaatatcatttttgtatgtgtgtagatgaggtttctctgaaaccgtttgttggtaatctccctattttgaataattct |
2021575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University