View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10759_low_15 (Length: 290)
Name: NF10759_low_15
Description: NF10759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10759_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 5e-99; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 17003808 - 17003550
Alignment:
| Q |
1 |
acatgcgagttgtaagaggttgtcgctctttttcatcatcagatttaaaagcatcacttgatttcataggccatatgtgagctccaaaagattgtcttat |
100 |
Q |
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| T |
17003808 |
acatgcgagttgtaagaggttgtcgctctttttcatcaccagatttaaaagcatcacttgattgcttaggccatatgcgagctccaaaagattgtcttgt |
17003709 |
T |
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| Q |
101 |
tttttcgtttgtgttgtcacccgaaattattttttcatttctccatccacaaatgcccaagttaattttatttccaggatataggtcatgttcgnnnnnn |
200 |
Q |
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| T |
17003708 |
tttttcttttgtgttgtcatcagaattatttttttcatttctccattcacaaatgcctaagttaattttatttccaggatataggtcatgttcgaaaaaa |
17003609 |
T |
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| Q |
201 |
nntgtccaatactgcttactttcttcacctcttatgggtacattggttccgctctctgc |
259 |
Q |
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| T |
17003608 |
aatgtccaatactgcttactttcttcacctcttatgggtacattggttccgctctctgc |
17003550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 259
Target Start/End: Original strand, 17118109 - 17118164
Alignment:
| Q |
204 |
gtccaatactgcttactttcttcacctcttatgggtacattggttccgctctctgc |
259 |
Q |
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| T |
17118109 |
gtccaatactgcttattttcttcacctctaatgggtagattggttctgctctctgc |
17118164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 17003925 - 17003891
Alignment:
| Q |
1 |
acatgcgagttgtaagaggttgtcgctctttttca |
35 |
Q |
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| T |
17003925 |
acatgcgagttgtaagaggttgtctctctttttca |
17003891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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