View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10759_low_18 (Length: 272)
Name: NF10759_low_18
Description: NF10759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10759_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 2 - 189
Target Start/End: Complemental strand, 10231401 - 10231214
Alignment:
| Q |
2 |
caactcttacgatcttcttctccaagatccactttactttatcaacatggttcccaaacccataataatattaacaactaaacaaccacccacaattcct |
101 |
Q |
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| T |
10231401 |
caactcttacgatcttcttctccaagatccactttactttatcaacatggttcccaaacccataataatattaacaactaaacaaccacccacaattcct |
10231302 |
T |
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| Q |
102 |
atccctcaatttaacatagcattcgtcagaacccaagaaaaaccccaaacatcacaacctcatgagacactaagaaccggttcccctg |
189 |
Q |
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| T |
10231301 |
atccctcaatttaacatagcattcgtcagaacccaagaaaaaccccaaacatcacaacctcatgagacactaagaaccggttcccctg |
10231214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 10240184 - 10240025
Alignment:
| Q |
1 |
gcaactcttacgatcttcttctccaagatccactttactttatcaacatggttcccaaacccataataatattaacaactaaacaaccacccacaattcc |
100 |
Q |
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| T |
10240184 |
gcaactcttactatctcct-ctccaaaatccactttaccttatcaacatggttcccaaacccatcatcataatagcatgtaaacaaccacccacaactta |
10240086 |
T |
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| Q |
101 |
tatccctcaatttaacatagcattcgtcagaacccaagaaaaaccccaaacatcacaacct |
161 |
Q |
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| T |
10240085 |
tatccctcaatttaacacagcatccgtcagaaccaaagaaaaacctcaaacatcacaacct |
10240025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 158
Target Start/End: Original strand, 10254486 - 10254574
Alignment:
| Q |
73 |
taacaactaaacaaccacccacaa-ttc--ctatccctcaatttaacatagcattcgtcagaacccaagaaaaaccccaaacatcacaa |
158 |
Q |
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| T |
10254486 |
taacaagtaaacaaccaccaacaacttcttctatccctccattcaacatctcatccatcaaaaccaaagaaaaaccccaaacatcacaa |
10254574 |
T |
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