View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10759_low_19 (Length: 265)
Name: NF10759_low_19
Description: NF10759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10759_low_19 |
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| [»] scaffold0769 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 29312428 - 29312191
Alignment:
| Q |
18 |
ctaacaacaataatcactctaacaaccttagacatatacttaatggcattgtgacaatcaccacatattctcaaattcttataaaccatatcatcgactg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29312428 |
ctaacaacaataatcactctaacaaccttagacatatacttaatggcattgtgacaatcaccacatattctcaaattcttataaaccatatcatcgactg |
29312329 |
T |
|
| Q |
118 |
tccattcaaattaagtatcccgaatgcaaccgcaagcttctcactatggtcataaagattctcagctttttcctcttgatcaatatcatgaagaacatga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29312328 |
tccattcaaattaagtatcccgaatgcaaccgcaagcttctcactatggtcataaagattctcagctttttcctcttgatcaatatcatgaagaacatga |
29312229 |
T |
|
| Q |
218 |
tcagagtcaggcttatatccagccacttttatttcatc |
255 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
29312228 |
tcagagtcaggcttatatccagccacttttatttcatc |
29312191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 21 - 251
Target Start/End: Original strand, 34635441 - 34635670
Alignment:
| Q |
21 |
acaacaataatcactctaacaaccttagacatatacttaatggcattgtgacaatcaccacatattctcaaattcttataaac-catatcatcgactgtc |
119 |
Q |
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|||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||| ||||||| | |
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| T |
34635441 |
acaacaatcatcacatcaacaaccttagccatatacttaatggcattgtgacaatcaccacatattctcaaattcttaaaaactcgtatcgtcgactgcc |
34635540 |
T |
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| Q |
120 |
cattcaaattaagtatcccgaatgcaaccgcaagcttctcactatggtcataaagattctcagctttttcctcttgatcaatatcatgaagaacatgatc |
219 |
Q |
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||||||||||||||||||| |||||||| ||||||||||||||||| | | ||||| ||||| ||||||||||||||||||||||||| ||||||| ||| |
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| T |
34635541 |
cattcaaattaagtatcccaaatgcaacggcaagcttctcactatgcttacaaagactctcaactttttcctcttgatcaatatcatgcagaacattatc |
34635640 |
T |
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| Q |
220 |
agagtcaggcttatatccagccacttttattt |
251 |
Q |
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|| ||| |||||||||||||| ||||||||| |
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| T |
34635641 |
agtgtc--gcttatatccagccgcttttattt |
34635670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 26 - 248
Target Start/End: Original strand, 29054608 - 29054828
Alignment:
| Q |
26 |
aataatcactctaacaaccttagacatatacttaatggcattgtgacaatcaccacatattctcaaattcttataaaccatatcatcgactgtccattca |
125 |
Q |
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||||||||| | |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||| || ||||||||||||||| |
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| T |
29054608 |
aataatcacacaaacaactttagacatatactaaatggcattgtgacaatcaccacatattctcaaatttttaaaaaccgcattgtcgactgtccattca |
29054707 |
T |
|
| Q |
126 |
aattaagtatcccgaatgcaaccgcaagcttctcactatggtcataaagattctcagctttttcctcttgatcaatatcatgaagaacatgatcagagtc |
225 |
Q |
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||||||||||||| |||||||| ||||||||||||||||||| | |||||||||||| |||||||||| || ||||||| |||||||| ||||| ||| |
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| T |
29054708 |
aattaagtatcccaaatgcaacagcaagcttctcactatggttacaaagattctcagttttttcctct--attaatatcaccaagaacataatcagtgtc |
29054805 |
T |
|
| Q |
226 |
aggcttatatccagccactttta |
248 |
Q |
| |
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|| ||||||||| |||||||||| |
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| T |
29054806 |
agccttatatccggccactttta |
29054828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 38 - 251
Target Start/End: Original strand, 13792349 - 13792563
Alignment:
| Q |
38 |
aacaaccttagacatatacttaatggcattgtgacaatcaccacatattctcaaattcttataaacca-tatcatcgactgtccattcaaattaagtatc |
136 |
Q |
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|||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||| |
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| T |
13792349 |
aacaacattggacatatacttaatggcattatgacaatcaccacatattctcaaattcttaaaaacccgtatcgtcgactgtccattcaaattaagtatc |
13792448 |
T |
|
| Q |
137 |
ccgaatgcaaccgcaagcttctcactatggtcataaagattctcagctttttcctcttgatcaatatcatgaagaacatgatcagagtcaggcttatatc |
236 |
Q |
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|| |||||||| ||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||| |
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| T |
13792449 |
ccaaatgcaacagcaagcttctcactatggttacaaagactctcagctttttcctcttgatcaatatcatgcagaacataatcagtgtcaggcttatatc |
13792548 |
T |
|
| Q |
237 |
cagccacttttattt |
251 |
Q |
| |
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||||| ||||||||| |
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| T |
13792549 |
cagccgcttttattt |
13792563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 39 - 251
Target Start/End: Complemental strand, 28743892 - 28743679
Alignment:
| Q |
39 |
acaaccttagacatatacttaatggcattgtgacaatcaccacatattctcaaattcttataaacca-tatcatcgactgtccattcaaattaagtatcc |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||| |
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| T |
28743892 |
acaaccttagacatatacttaatggcattgtgacaatcaccgcatattctcaaattcttaaaaacccgtattgtcgactgtccattcaaattaagtatcc |
28743793 |
T |
|
| Q |
138 |
cgaatgcaaccgcaagcttctcactatggtcataaagattctcagctttttcctcttgatcaatatcatgaagaacatgatcagagtcaggcttatatcc |
237 |
Q |
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| || ||||| ||||||||||||||||||| | | ||| |||||||||||||||||||||||||||| || ||||||| ||||| ||||||||||||||| |
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| T |
28743792 |
caaaggcaacagcaagcttctcactatggttacagagactctcagctttttcctcttgatcaatatcttgcagaacataatcagtgtcaggcttatatcc |
28743693 |
T |
|
| Q |
238 |
agccacttttattt |
251 |
Q |
| |
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||||| ||| |||| |
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| T |
28743692 |
agccattttcattt |
28743679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0769 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0769
Description:
Target: scaffold0769; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 21 - 251
Target Start/End: Complemental strand, 4473 - 4244
Alignment:
| Q |
21 |
acaacaataatcactctaacaaccttagacatatacttaatggcattgtgacaatcaccacatattctcaaattcttataaac-catatcatcgactgtc |
119 |
Q |
| |
|
|||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||| ||||||| | |
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| T |
4473 |
acaacaatcatcacatcaacaaccttagccatatacttaatggcattgtgacaatcaccacatattctcaaattcttaaaaactcgtatcgtcgactgcc |
4374 |
T |
|
| Q |
120 |
cattcaaattaagtatcccgaatgcaaccgcaagcttctcactatggtcataaagattctcagctttttcctcttgatcaatatcatgaagaacatgatc |
219 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||||| | | ||||| ||||| ||||||||||||||||||||||||| ||||||| ||| |
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| T |
4373 |
cattcaaattaagtatcccaaatgcaacggcaagcttctcactatgcttacaaagactctcaactttttcctcttgatcaatatcatgcagaacattatc |
4274 |
T |
|
| Q |
220 |
agagtcaggcttatatccagccacttttattt |
251 |
Q |
| |
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|| ||| |||||||||||||| ||||||||| |
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|
| T |
4273 |
agtgtc--gcttatatccagccgcttttattt |
4244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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