View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10759_low_2 (Length: 443)
Name: NF10759_low_2
Description: NF10759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10759_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 17 - 430
Target Start/End: Original strand, 6827426 - 6827847
Alignment:
| Q |
17 |
accaagttggtcagaatgaaaccaaccaagggaaatgattcaatattttgggaaacaagctttgaatcagtgattgaggattatagatacgtagatggta |
116 |
Q |
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| T |
6827426 |
accaagttggtcagaatgaaaccaaccaagggaaatgattcaatattttgggaaacaagctttgaatcagtgattgaggattatagatacgtagatggta |
6827525 |
T |
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| Q |
117 |
ttaaaatagcgcatggtggaaaaacagtggccatgttatatagatatggcgtagcacataaccataggcgaagaattgaggagacatggaggattgaaga |
216 |
Q |
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| T |
6827526 |
ttaaaatagcgcatggtggaaaaacagtggccatgttatatagatatggcgtagcacataaccataggcgaagaattgaggagacatggaggattgaaga |
6827625 |
T |
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| Q |
217 |
aattgattttaacatttgtggcttgtcaatggattgttttttgcctccctctgatatcaagaaggaacatgaggctgtagagcaaattgtgtagtaggaa |
316 |
Q |
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| T |
6827626 |
aattgattttaacatttgtggcttgtcaatggattgttttttgcctccctctgatatcaagaaggaacatgaggctgtagagcaaattgtgtagtaggaa |
6827725 |
T |
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| Q |
317 |
agagtttggattttccttagctttttcgatcttttttgtcaatcgtaagacaaattttgtacatatgg--------tatagaagcaaatcatagctgaat |
408 |
Q |
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| T |
6827726 |
agagtttggattttccttacctttttcaatcttttttgtcaaccgtaagacaaattttgtacatatggtatagaactatagaagcaaatcatagctgaat |
6827825 |
T |
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| Q |
409 |
acgaaaatatttctctaggtct |
430 |
Q |
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| T |
6827826 |
acgaaaatatttctctaggtct |
6827847 |
T |
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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 52297292 - 52297356
Alignment:
| Q |
191 |
attgaggagacatggaggattgaagaaattgattttaacatttgtggcttgtcaatggattgttt |
255 |
Q |
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| T |
52297292 |
attgaggaaatatggagtattgaagaagttgattttaacatttttggattgtctatggattgttt |
52297356 |
T |
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