View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10759_low_20 (Length: 257)

Name: NF10759_low_20
Description: NF10759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10759_low_20
NF10759_low_20
[»] chr6 (19 HSPs)
chr6 (1-185)||(5065365-5065551)
chr6 (13-192)||(5253738-5253919)
chr6 (153-230)||(5065245-5065322)
chr6 (27-111)||(23127300-23127384)
chr6 (1-200)||(5177932-5178127)
chr6 (1-102)||(5279757-5279860)
chr6 (133-211)||(5178132-5178210)
chr6 (1-102)||(5346222-5346325)
chr6 (158-211)||(5688716-5688769)
chr6 (1-102)||(5126628-5126731)
chr6 (158-210)||(5279988-5280040)
chr6 (1-102)||(5688902-5689005)
chr6 (46-101)||(5398286-5398341)
chr6 (27-125)||(5098432-5098530)
chr6 (5-91)||(5100828-5100916)
chr6 (30-111)||(5124433-5124514)
chr6 (5-91)||(5135929-5136017)
chr6 (1-102)||(5242511-5242614)
chr6 (160-200)||(5279915-5279955)
[»] chr3 (4 HSPs)
chr3 (1-101)||(47985393-47985495)
chr3 (1-101)||(47994680-47994782)
chr3 (1-101)||(48003967-48004069)
chr3 (1-101)||(48013252-48013354)
[»] chr4 (2 HSPs)
chr4 (43-143)||(4132576-4132676)
chr4 (28-102)||(4122643-4122717)
[»] scaffold0294 (1 HSPs)
scaffold0294 (23-100)||(7878-7955)


Alignment Details
Target: chr6 (Bit Score: 124; Significance: 7e-64; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 5065551 - 5065365
Alignment:
Q  1 gagagtagtgtcaagtattgaac--ggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatat 98  Q
    ||||||||| |||||||||||||  ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  5065551 gagagtagtatcaagtattgaacctggaaataaagtggattttgttgttgtttttgagaacggtttcgttgtgaagaggacaacagtttatctcatatat 5065452  T
Q  99 gatggactgattgctgaaaaagtggaggagtgtcatgcacaagataagagtggtattgttagtagtagtgatgaaaatgaatgcttt 185  Q
    |||| ||  ||||||||||| | |||||||||||||||||||||||||| || ||||||||||||  ||||||||||||||||||||    
T  5065451 gatgaaccaattgctgaaaagggggaggagtgtcatgcacaagataagaatgttattgttagtagcggtgatgaaaatgaatgcttt 5065365  T

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Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 13 - 192
Target Start/End: Original strand, 5253738 - 5253919
Alignment:
Q  13 aagtattgaac--ggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatatgatggactgatt 110  Q
    |||||||||||  ||||| |||||||| ||||||||||||||||||||  ||||| ||||||||||||| ||||||||||| |||||||| |  |  |||    
T  5253738 aagtattgaacctggaaataaagtggagtttgttgttgtttttgagaacagtttcattgtgaagaggacgacagtttatctcatatatgacgagcccatt 5253837  T
Q  111 gctgaaaaagtggaggagtgtcatgcacaagataagagtggtattgttagtagtagtgatgaaaatgaatgctttgtcagaa 192  Q
    |||||||| | |||||||||||||| |||||||| || || ||||||||||||| || ||||||||||||| ||||| ||||    
T  5253838 gctgaaaaggcggaggagtgtcatggacaagatatgaatgttattgttagtagtggttatgaaaatgaatgttttgttagaa 5253919  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 153 - 230
Target Start/End: Complemental strand, 5065322 - 5065245
Alignment:
Q  153 attgttagtagtagtgatgaaaatgaatgctttgtcagaaaagtctctcctcaagtggcgccggttgatgacttaaca 230  Q
    |||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||  || || ||||||||||||    
T  5065322 attgtttgtagtggtgaagaaaatgaatgctttgtcagaaaagtctctcctcaagtggttcctgtggatgacttaaca 5065245  T

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Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 111
Target Start/End: Complemental strand, 23127384 - 23127300
Alignment:
Q  27 aacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatatgatggactgattg 111  Q
    |||||| ||||  ||||||| ||||||||||||||||||||||||||||  ||||||||||||||| ||||||||| ||| ||||    
T  23127384 aacaaaatggaggttgttgtcgtttttgagaatggtttcgttgtgaagaatacaacagtttatcttgtatatgatgaactaattg 23127300  T

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Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 5177932 - 5178127
Alignment:
Q  1 gagagtagtgtcaagtattgaacg--gaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatat 98  Q
    ||||||||| |||||||| ||||   | |||||||||||  ||||||||||||||||||| |||||| |||||||||  ||||||||||||||  |||||    
T  5177932 gagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtatat 5178031  T
Q  99 gatggactgattgctgaaaaagtggaggagtgtcatgcacaagataagagtggtattgttagtagtagtgatgaaaatgaatgctttgtcagaaaagtct 198  Q
    |||| ||  ||||  |||||| ||||| | || || | |||||  ||||     |||||  ||||| |||||||| ||||||||||||||||| ||||||    
T  5178032 gatgaaccaattggagaaaaaatggagcaatgccaagaacaag--aaga----aattgtgtgtagtggtgatgaagatgaatgctttgtcagagaagtct 5178125  T

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Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 5279757 - 5279860
Alignment:
Q  1 gagagtagtgtcaagtattgaacg--gaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatat 98  Q
    ||||||||| |||||||| ||||   | |||||||||||  ||||||||||||||||||| |||||| |||||||||  ||||||||||||||  |||||    
T  5279757 gagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtatat 5279856  T
Q  99 gatg 102  Q
    ||||    
T  5279857 gatg 5279860  T

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Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 211
Target Start/End: Original strand, 5178132 - 5178210
Alignment:
Q  133 atgcacaagataagagtggtattgttagtagtagtgatgaaaatgaatgctttgtcagaaaagtctctcctcaagtggc 211  Q
    ||||||||||| | | ||  |||||||||||| ||||||||||||||||  |||||||||| |||||||||||||||||    
T  5178132 atgcacaagattacaatgtcattgttagtagtggtgatgaaaatgaatgtgttgtcagaaatgtctctcctcaagtggc 5178210  T

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Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 5346222 - 5346325
Alignment:
Q  1 gagagtagtgtcaagtattgaac--ggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatat 98  Q
    |||||| || |||||||| ||||  || |||||||||||  |||| |||||| |||||||||||||| ||||||||| |||| || ||||||| ||||||    
T  5346222 gagagttgtatcaagtatagaacctggtaacaaagtggaggttgtcgttgttattgagaatggtttcattgtgaagaagacagcaatttatctcatatat 5346321  T
Q  99 gatg 102  Q
    ||||    
T  5346322 gatg 5346325  T

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Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 5688769 - 5688716
Alignment:
Q  158 tagtagtagtgatgaaaatgaatgctttgtcagaaaagtctctcctcaagtggc 211  Q
    ||||||| ||||||||||||||||  |||||||||| |||||||||||||||||    
T  5688769 tagtagtggtgatgaaaatgaatgtgttgtcagaaatgtctctcctcaagtggc 5688716  T

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Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 5126731 - 5126628
Alignment:
Q  1 gagagtagtgtcaagtattgaac--ggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatat 98  Q
    ||||||||| |||||||| |||   || |||||||| ||  |||||||||||||| |||| |||||| ||||||||| |||| | |||||||| ||||||    
T  5126731 gagagtagtatcaagtatagaagctggtaacaaagttgagattgttgttgtttttaagaacggtttcattgtgaagaagacagctgtttatctcatatat 5126632  T
Q  99 gatg 102  Q
    ||||    
T  5126631 gatg 5126628  T

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Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 5279988 - 5280040
Alignment:
Q  158 tagtagtagtgatgaaaatgaatgctttgtcagaaaagtctctcctcaagtgg 210  Q
    ||||||| ||||||||||||||||  |||||||||| ||||||||||||||||    
T  5279988 tagtagtggtgatgaaaatgaatgtgttgtcagaaatgtctctcctcaagtgg 5280040  T

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Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 5689005 - 5688902
Alignment:
Q  1 gagagtagtgtcaagtattgaacg--gaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatat 98  Q
    ||||||||| |||||||| ||||   | |||||||||||  |||||  |||||||||||| |||||| |||||||||  ||||||||||||||  |||||    
T  5689005 gagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtatat 5688906  T
Q  99 gatg 102  Q
    ||||    
T  5688905 gatg 5688902  T

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Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 101
Target Start/End: Original strand, 5398286 - 5398341
Alignment:
Q  46 ttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatatgat 101  Q
    ||||||| ||||||| |||| ||||||||| |||||||||||||||| ||||||||    
T  5398286 ttgttttcgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 5398341  T

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Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 125
Target Start/End: Original strand, 5098432 - 5098530
Alignment:
Q  27 aacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatatgatggactgattgctgaaaaagtggag 125  Q
    |||||||||||  |  |||||||||| |||||  ||||| ||||||| | |||| ||||||||||  ||||||||| ||  |||| |||||||||||||    
T  5098432 aacaaagtggaggtcattgttgttttcgagaacagtttcattgtgaaaaagacagcagtttatctggtatatgatgaacaaattggtgaaaaagtggag 5098530  T

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Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 91
Target Start/End: Complemental strand, 5100916 - 5100828
Alignment:
Q  5 gtagtgtcaagtattgaac--ggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatct 91  Q
    ||||| |||||||| ||||  || |||||||||||  | |||||||||||||||||  ||||| ||||||| | |||| ||||||||||    
T  5100916 gtagtatcaagtatagaacccggtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatct 5100828  T

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Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 111
Target Start/End: Complemental strand, 5124514 - 5124433
Alignment:
Q  30 aaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatatgatggactgattg 111  Q
    |||||||| |||||| |||||||| ||||  | ||| ||||||||  ||||||| | ||| |||||||||||| ||||||||    
T  5124514 aaagtggaatttgtttttgtttttaagaaccgcttcattgtgaaggagacaacaatgtatattatatatgatgaactgattg 5124433  T

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Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 91
Target Start/End: Complemental strand, 5136017 - 5135929
Alignment:
Q  5 gtagtgtcaagtattgaac--ggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatct 91  Q
    ||||| |||||||| ||||  || |||||||||||  | |||||||||||||||||  ||||| ||||||| | |||| ||||||||||    
T  5136017 gtagtatcaagtatagaacccggtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatct 5135929  T

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Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 5242614 - 5242511
Alignment:
Q  1 gagagtagtgtcaagtattgaac--ggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatat 98  Q
    ||||||||| | |||||| ||||  || |||||||||||  | ||| |||||||||||||  ||||| ||||||||| ||||  |||||||||  |||||    
T  5242614 gagagtagtatgaagtatagaacctggtaacaaagtggaggtcgtttttgtttttgagaacagtttcattgtgaagaagacagtagtttatctcgtatat 5242515  T
Q  99 gatg 102  Q
    ||||    
T  5242514 gatg 5242511  T

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Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 5279915 - 5279955
Alignment:
Q  160 gtagtagtgatgaaaatgaatgctttgtcagaaaagtctct 200  Q
    ||||| |||||||| ||||||||||||||||| ||||||||    
T  5279915 gtagtggtgatgaagatgaatgctttgtcagagaagtctct 5279955  T

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Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 47985495 - 47985393
Alignment:
Q  1 gagagtagtgtcaagtattgaac--ggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatat 98  Q
    ||||||||| |||||||| ||||  || |||||||||||  | |||||||||||||||||||||||| |||||||||||| | ||||||||||| |||||    
T  47985495 gagagtagtatcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtatat 47985396  T
Q  99 gat 101  Q
    |||    
T  47985395 gat 47985393  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 47994782 - 47994680
Alignment:
Q  1 gagagtagtgtcaagtattgaa--cggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatat 98  Q
    ||||||||| |||||||| |||  ||| |||||||||||  | |||||||||||||||||||||||| |||||||||||| | ||||||||||| |||||    
T  47994782 gagagtagtatcaagtatagaatccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtatat 47994683  T
Q  99 gat 101  Q
    |||    
T  47994682 gat 47994680  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 48004069 - 48003967
Alignment:
Q  1 gagagtagtgtcaagtattgaac--ggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatat 98  Q
    ||||||||| |||||||| ||||  || |||||||||||  | |||||||||||||||||||||||| |||||||||||| | ||||||||||| |||||    
T  48004069 gagagtagtatcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtatat 48003970  T
Q  99 gat 101  Q
    |||    
T  48003969 gat 48003967  T

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Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 48013354 - 48013252
Alignment:
Q  1 gagagtagtgtcaagtattgaa--cggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatat 98  Q
    ||||||||| |||||||| |||  ||| |||||||||||  | |||||||||||||||||||||||| |||||||||||| | ||||||||||| |||||    
T  48013354 gagagtagtatcaagtatagaatccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtatat 48013255  T
Q  99 gat 101  Q
    |||    
T  48013254 gat 48013252  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 143
Target Start/End: Complemental strand, 4132676 - 4132576
Alignment:
Q  43 ttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatatgatggactgattgctgaaaaagtggaggagtgtcatgcacaaga 142  Q
    |||||||||||| |||  ||||| |||||| || |||| |||||||||| |||||||||| ||  |||| ||||||  ||| | | ||||||||||||||    
T  4132676 ttgttgtttttgggaacagtttcattgtgatgaagacagcagtttatctcatatatgatgaaccaattggtgaaaatttggggcaatgtcatgcacaaga 4132577  T
Q  143 t 143  Q
    |    
T  4132576 t 4132576  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 102
Target Start/End: Complemental strand, 4122717 - 4122643
Alignment:
Q  28 acaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatatgatg 102  Q
    ||||||||||  |||||||||||||||  ||  ||||| |||||| || |||| |||||||||| ||||||||||    
T  4122717 acaaagtggagattgttgttgtttttggaaacagtttcattgtgatgaagacatcagtttatctcatatatgatg 4122643  T

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Target: scaffold0294 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 7955 - 7878
Alignment:
Q  23 cggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatatga 100  Q
    |||||||||||||||  ||||||||||||||| | | |||||| ||| |||    |||||| ||||||||||||||||    
T  7955 cggaaacaaagtggaggttgttgttgtttttggggacggtttcattgcgaaagaaacaacaatttatcttatatatga 7878  T

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