View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10759_low_25 (Length: 250)
Name: NF10759_low_25
Description: NF10759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10759_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 35517902 - 35517663
Alignment:
| Q |
1 |
cacttctagtttacgtggatgatatcgtcctcgcgggtgatgatctcactgaaatacaacatgtaaaatctttctcggatcaacagttcaatattaaaga |
100 |
Q |
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| T |
35517902 |
cacttctagtttatgtggatgatatcgtcctcgcaggtgatgatctcactgaaatacaacatgtaaaatctttcttggatcaacagttcagtattaaaga |
35517803 |
T |
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| Q |
101 |
tcttggcaaacttcgcttctttcttggtcttgagatagctcgatctacgagtggtatcttgctcaatcaacgcaagtatactttggattttctctctgac |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35517802 |
tcttggcaaacttcacttctttcttggtcttgagatagctcgatctccgagtggtatcttgctcaatcaacgcaagtatactttggattttctctctgac |
35517703 |
T |
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| Q |
201 |
agtggccatcttgctgtgaagccttattctactccctatg |
240 |
Q |
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| T |
35517702 |
atcggccatcttgttgtgaagccttattctactccctatg |
35517663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 33768116 - 33768355
Alignment:
| Q |
1 |
cacttctagtttacgtggatgatatcgtcctcgcgggtgatgatctcactgaaatacaacatgtaaaatctttctcggatcaacagttcaatattaaaga |
100 |
Q |
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||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||| |
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| T |
33768116 |
cacttctagtttacgtggatgatattgtcctcacgggtgatgatctcactgaaatacaacatgtaaaatctttcttggatcaacaattcagtattaaaga |
33768215 |
T |
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| Q |
101 |
tcttggcaaacttcgcttctttcttggtcttgagatagctcgatctacgagtggtatcttgctcaatcaacgcaagtatactttggattttctctctgac |
200 |
Q |
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| T |
33768216 |
tcttggcaaacttcgcttctttcttggtcttgagatagctcgatctccgagtggtatcttgctcaatcaacgcaaatatactttggatttgctctcttac |
33768315 |
T |
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| Q |
201 |
agtggccatcttgctgtgaagccttattctactccctatg |
240 |
Q |
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| T |
33768316 |
agtggccatcttgctgtgaagccttgttctactccctatg |
33768355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 7 - 236
Target Start/End: Complemental strand, 12473091 - 12472862
Alignment:
| Q |
7 |
tagtttacgtggatgatatcgtcctcgcgggtgatgatctcactgaaatacaacatgtaaaatctttctcggatcaacagttcaatattaaagatcttgg |
106 |
Q |
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||||||||||||||||||| ||||||||||||||| |||||||| |||| |||||||| | || || || |||||| | ||||||||||||||||||||| |
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| T |
12473091 |
tagtttacgtggatgatattgtcctcgcgggtgataatctcacttaaattcaacatgtcagatattccttggatcagcggttcaatattaaagatcttgg |
12472992 |
T |
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| Q |
107 |
caaacttcgcttctttcttggtcttgagatagctcgatctacgagtggtatcttgctcaatcaacgcaagtatactttggattttctctctgacagtggc |
206 |
Q |
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||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
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| T |
12472991 |
caaacttcgcttctttcttggtcttgagataactcgatctccgagtggtatcttgctcaatcaacacaagtatactttggattttctctctgacagaggc |
12472892 |
T |
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| Q |
207 |
catcttgctgtgaagccttattctactccc |
236 |
Q |
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|||||||| ||||| |||| |||||||||| |
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| T |
12472891 |
catcttgccgtgaacccttgttctactccc |
12472862 |
T |
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