View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10759_low_28 (Length: 237)
Name: NF10759_low_28
Description: NF10759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10759_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 27641255 - 27641037
Alignment:
| Q |
1 |
attaagatcaggtttgctcattaaatatccattaaattctgtggtatgaatgaaatgatgaatgatattggtcatttccttctttctggtttccttcatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27641255 |
attaagatcaggtttgctcattaaatatccattaaattctgtggtatgaatgaaatgatgaatgatattggtcatttccttctttctggtttccttcatt |
27641156 |
T |
|
| Q |
101 |
tgtttcttcaactgctcatagacttttccaatgctttgcctcaataatacttcttgatccaccatctttttacttcgttctagtcctggcaaactcctga |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
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| T |
27641155 |
tgtgtcttcaactgctcatagacttttccaatgctttgcctcaagaatacttcttgatccaccatctttttacttcgttctagtccaggcaaactcctaa |
27641056 |
T |
|
| Q |
201 |
acctggatatcacacttct |
219 |
Q |
| |
|
||||||||||||||||||| |
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| T |
27641055 |
acctggatatcacacttct |
27641037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 5 - 219
Target Start/End: Original strand, 26457991 - 26458205
Alignment:
| Q |
5 |
agatcaggtttgctcattaaatatccattaaattctgtggtatgaatgaaatgatgaatgatattggtcatttccttctttctggtttccttcatttgtt |
104 |
Q |
| |
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||||||| ||||||||| ||| ||||||||||||| |||| ||||| |||||| ||||||||||||||||||| ||||||||||||||| | |||| | |
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| T |
26457991 |
agatcagatttgctcatcgaatttccattaaattctatggtttgaatataatgatcaatgatattggtcatttccatctttctggtttcctccctttgct |
26458090 |
T |
|
| Q |
105 |
tcttcaactgctcatagacttttccaatgctttgcctcaataatacttcttgatccaccatctttttacttcgttctagtcctggcaaactcctgaacct |
204 |
Q |
| |
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||||||||||||| |||||||| |||||||||||| |||| || || || ||||||||||||||||||| | |||| ||| ||||||||||| ||||| |
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| T |
26458091 |
tcttcaactgctcgtagactttcccaatgctttgcttcaagaagacctcctgatccaccatctttttacattgttcatatccaggcaaactcctaaacct |
26458190 |
T |
|
| Q |
205 |
ggatatcacacttct |
219 |
Q |
| |
|
|||||||||||||| |
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| T |
26458191 |
agatatcacacttct |
26458205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 23675481 - 23675263
Alignment:
| Q |
1 |
attaagatcaggtttgctcattaaatatccattaaattctgtggtatgaatgaaatgatgaatgatattggtcatttccttctttctggtttccttcatt |
100 |
Q |
| |
|
|||||||||| |||||||||| ||| ||||||||||||| ||| ||||| |||||| |||||||||||||||||||||||||||||||||| | || |
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| T |
23675481 |
attaagatcatatttgctcattgaatttccattaaattctacggtttgaatataatgatcaatgatattggtcatttccttctttctggtttccaacctt |
23675382 |
T |
|
| Q |
101 |
tgtttcttcaactgctcatagacttttccaatgctttgcctcaataatacttcttgatccaccatctttttacttcgttctagtcctggcaaactcctga |
200 |
Q |
| |
|
|| |||||||||||| | |||||||| |||||| |||||||||| || || || ||||||||||||||||||||| |||| | ||| ||||||||||| | |
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| T |
23675381 |
tgcttcttcaactgcccgtagactttcccaatggtttgcctcaagaagacctcctgatccaccatctttttactttgttcaactccaggcaaactcctaa |
23675282 |
T |
|
| Q |
201 |
acctggatatcacacttct |
219 |
Q |
| |
|
|||| |||||||||||||| |
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|
| T |
23675281 |
acctagatatcacacttct |
23675263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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